Coregonus clupeaformis (lake whitefish): 121542009
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Entry
121542009 CDS
T08357
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03030
DNA replication
cclu03420
Nucleotide excision repair
cclu03430
Mismatch repair
cclu03440
Homologous recombination
cclu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121542009
03420 Nucleotide excision repair
121542009
03430 Mismatch repair
121542009
03440 Homologous recombination
121542009
03460 Fanconi anemia pathway
121542009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121542009
03032 DNA replication proteins [BR:
cclu03032
]
121542009
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121542009
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121542009
DNA replication proteins [BR:
cclu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
121542009
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
121542009
MMR (mismatch excision repair)
121542009
DSBR (double strand breaks repair)
HR (homologous recombination)
121542009
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
DUF8448
Cas7fv-like
Motif
Other DBs
NCBI-GeneID:
121542009
NCBI-ProteinID:
XP_041707365
LinkDB
All DBs
Position
27:complement(45692092..45810686)
Genome browser
AA seq
625 aa
AA seq
DB search
MSCQIGHDFDKKMTVKLTEGAIEALTKGTNVHSPLLQVLNIRRIEMGSGQPRFRLMMSDG
LHTMSSFMLAIQLNSLGEENCLLPHCVCLLKRSVTNILKDGRCVVIVLDMEVVKSAEEMG
GKIGTPTPYVGVFSPGQTSTPENQLSAQSYPAASTASPHNQPSASSSTRGPGGRGDSGKK
TPTATPTTPGGSATKVVPIASLNLYQTKWTIRARVTNKSSIRTWRNSRAEGRLFSFEIVD
KSGEIRVTAFNKEVDKFFSLLETGKVYYISQGKIKIAKKQYMTLKNNYEMTLQRETSIVQ
CEDDQDLPMVQCDFIPIAQLEHKDKDAIIDVIGVCRSVDGVSRITTKTSREVYKRDIHLM
DTSGKAVAVTLWGEEAEVFDGSGQPIVAVKRARLSDFGGRSISALFSSTVMVNPDIPETH
RLRGWYDQEGHALDGQSLTELRPGGGGANTCWKTLSDVKTEQLGQGDKAEYFSCVATVLF
SRKESCLYQACPTTDCKKKVIDQQNGLYHCEKCNKEFPNYKYCLILSAIIADFSDNQWVT
CFQETAESILGHNSETLGQLKDTDEAAFDEVFQKVNFTTHIFRNRVKLEIYNDESRVKAT
VMEVKPVDHREYSRRLISNIRKMAA
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagctgtcaaatcggacacgacttcgacaaaaaaatgacagtaaaactcaccgagggt
gcaattgaggccctgaccaaaggcactaacgtgcacagtcctctgcttcaggtgctgaac
attcgtcgtatcgagatgggttctggtcaaccccggttccgcctcatgatgagtgatggc
ttgcacaccatgtcctccttcatgctggccatccagttgaacagtctgggtgaggagaac
tgtctgctcccccactgtgtgtgtctactgaagaggagcgtcaccaacatactgaaggat
ggaaggtgtgtggtgatagtattggacatggaggtagtgaagtcagcagaggagatggga
gggaagattggaacacccactccctatgtaggagtgttctctccaggccagactagcacc
cctgagaaccagctctctgcccagagctaccctgctgcttctactgcctcccctcacaac
caacccagtgcctcctcttctaccagaggcccaggtggcagaggagactcggggaagaag
actcctacagctactcctactacacctggaggttctgccactaaagtagtccccatcgcc
agcctcaacctctaccagaccaaatggaccatcagggcccgggtcaccaataagagcagc
atccgtacctggagaaactcaagagcagagggaagactgttctccttcgagatcgtggac
aagagcggggagatcagagtaacagccttcaacaaggaagtggacaagttcttctctctg
ctggagacgggcaaggtgtactacatctcgcagggcaaaataaagatagccaagaagcag
tatatgaccctgaagaacaactatgagatgaccctccaaagagagacatccatcgtgcag
tgtgaggatgaccaggaccttcccatggtgcagtgcgacttcatacccatcgctcagctg
gagcacaaggacaaggacgccatcatcgatgtgataggagtgtgtaggagtgtggatggt
gtgagtcgtatcaccaccaagaccagtagagaggtgtataaaagagacattcacctgatg
gacaccagtggcaaggctgtcgcagtcacactgtggggcgaagaggcagaggtgtttgat
ggttcaggccagcctatagtagcagttaaaagagcccgcctgtcagactttggaggccgc
tctatctctgctctcttcagctccactgtcatggtcaaccctgacatacctgagacccac
aggctgaggggatggtatgatcaggagggtcatgctctggatggccaatcactgacagag
ttgaggcctggaggaggcggagccaacacttgctggaaaacactcagcgacgtcaagact
gaacaactgggacagggagacaaggcagagtatttcagctgtgtagccacagtgttgttt
agtcgtaaggaaagctgtctgtaccaggcctgtcccactacagactgtaagaagaaggtg
atagaccaacaaaatggactctaccactgtgagaagtgtaacaaagaattccccaactac
aaatactgcctcatactgtctgctatcatagcagacttcagtgataaccagtgggtgacg
tgtttccaggagacagcagagagcattctgggtcacaactcagagactctgggccagctt
aaagatacggatgaggcagcgtttgacgaggtgttccagaaggtcaacttcaccacacac
atcttccgcaacagagtcaagctggagatttacaatgatgagtcccgagtgaaggccacg
gtgatggaggtgaaaccagtggaccacagagaatacagcaggagactaatcagcaacatc
aggaaaatggccgcctaa
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