Coregonus clupeaformis (lake whitefish): 121542023 Help Entry 121542023         CDS       T08357                                  Symbol dchs1b Name (RefSeq) protocadherin-16   KO K16507   protocadherin-16/23 Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu04519   Cadherin signaling Brite KEGG Orthology (KO) [BR:cclu00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04519 Cadherin signaling     121542023 (dchs1b)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04515 Cell adhesion molecules [BR:cclu04515]     121542023 (dchs1b) Cell adhesion molecules [BR:cclu04515]  Cadherins   Cadherin related    121542023 (dchs1b) SSDB OrthologParalogGFIT Motif Pfam:  Cadherin Cadherin_FAT4_N Cadherin_CELSR2_9th Ig_Cad99C_N Ig_CLSTN Fibulin_C Cadherin_pro TMEM154 CADH_Y-type_LIR C1orf162 YxzE LapA_dom TED6 EphA2_TM Motif Other DBs NCBI-GeneID:  121542023 NCBI-ProteinID:  XP_041707382 LinkDB All DBs Position 27 Genome browser AA seq 2689 aa AA seqDB search MVPAQFTVNKETGQLCSSTTLDREQGSGNYDLTVTATDGGGLSVVARVRVYLEDINDNRP SFYPLLYTVSLSTHSAPGTSVTKVMANDPDAGDNGRVTYRTVPGGGSAFFTLNKDTGVIS LARSLHSKANTLVSMVISAQDGGGLTAPVNARVNVSVVGGSVAPPLFDQAQYYFTVSEEV LRGTEVGKVHAATKTGNSQDISYSISSGDPDGYFTMDSTSGALRSSLPLDHEACPSLDLE VQARYGSPPAYGTTRVRVTISDVNDNAPSFLPSSSESLLLPEVTKMGTVVYRVQAADRDS GPNSQLSFDLVSIGAGGRMFGVDRGSGELRLIGGLNYESVPRYDLQVVAKDGGVPQLSST FTLVVHVQAQDAQGPAFDTLTYRVELQENAPLNTRFLQVRALNREAAGNGGGSTSSHSSS SVSYRLRPDGDAAGFGVAPDSGWLFVRSALDREAKDMYLLTVLATSGPGGQGVAGAGRTG SATVRVSVTDENDNSPRLSQERVFLAVRENLPVGTGFGRVSAADRDAGQNARLTFRLLHT DRHFQINSHTGEISTRLSLDREQQSSYQLVVVVQDGGTPPRSTTGTAHITVLDENDNAPV FSHTHPDRELLIQVMEGSQPGSVLGTVTAKDPDEGENGTLHYSLSGYGVESFSLNPTSGE LRYSSPHRHSERADYTLTVSASDNGTPPQTSTCPLRIQVLSSNKSSAKNTLSMTLNSVEG IAPGSVIGSVRSHDQRDPLSLDGQVTYVVVGGTDQKGTFMVDRVTGDVYLVRELDYEEGD RYTLHVEVSDFSLVYPSSHRVQLVINVQDSNDHAPQFTEDPVTIVIPENTQPGASIYTFQ AADKDGGGPNSELHYSIQHRWPDSLHILTLDPSTGVLTLGQKLDHETTPSLYLVVRATDQ AEDLSARRWGSVTARVFVTDENDNAPVFSSPSAVSVMEDQPVGFVVVYVMARDEDEGENG RVSYSIQLGNSAGRFSLNPNTGSLSILKALDREDQEVFNLTIIAEDHGMPQLSTSQVLSV HVIDVNDELPLFLGDELEAEVRENQEAGTTVITVTATDRDQGSNGQVTYGGVTEEGFTIN PVTGVITTTKTLDRETQDHYTLTVYARDGGLPPNFAKVVVRVLVQDENDNVPVFARPWYG LEVPESQSPVELWIVRATDTDTGPAGDIQYRITAGDPDGDFQLHVSSGALSTSRPLDREL RAGYTLEVVALDHGSPALSSTATVEVTVLDVNDNSPAFSSNSFTIDVSEDAAQGTPVLEV TATDADEGENGKVIYFLSREARGAFTVDEDTGRITTASPLDREKIASYSFHVFAVDLSPA EPRNTSAQITVMILDMNDNAPFFIQDPLVVEVSASQSQRVLATMRAEDKDFGANGSVFYR FAVPVRGFSINSLTGEIQGTEGIDKLSQAQRTLMVEAMDQGTPAQSSLGVVVVYVKEQEY TGIRFSRNARDVSIQENAAKGTAVAQDQAQYPDGTKRGISYSLFSGNRLQAFSISTGTGE IWVQRSLGLDFEDTPRLRLVVKAETASSSSFMAVNLILQDINDNLPRFQLQNYVAYMREA QGYDRPIIQVVAEDVDQGQNGQVTYSIQSSGGMSGLFKIDPVTGSITTAAIMDREIWTQT RLVVTATDRGNPRLAGSATLTVIIVDLNDNSPTIPLPREVRIPENTLIGTEITLVTGNDV DSSPALSYSLQLDGSSQGKFGIHRYSGGVSLTSPLDYEDRTWYTLTIRATDSQHQTEANI TVLVEDVNDNAPAFTQDLYQVTLPEHSPPGSPVVTVTATDRDSGENGKVTYRVMSSTRGG FYVDPSNGTLFIRERAEFDPENPSVSVVIEACDGGSPPLSSVTTVQVQLSDVNDNAPVFH QSEYRATVSEDSIPGATILTLEAMDADFSRDNCGFDFAIARGNTGNVFQIESSVRFLEGR GFQTVGTLLLAEELDFEAMPLYNLTVVVSDRGVPQRSSSVAAVITVGDVNDNPPAFGRAE YVVSLSEGAGAGTEILRLTATDPDSAPNAEVQYSISSGDEMDLFTIDQWTGALRLQRPLD REHQSSHVVIVQASDGRGHVALAPISVEVKDVNDNRPFFPVETLTASIRENQPVNSAVTI LHAIDHDTGMYGQLRYYMVERGQGSGVTGREAFTVDQSSGEVRAKMTFDFEKVNSFNFVA LAMDAGNHSATVTVQVYVTGEDEYDPLFVSPEFSFEVPEGAKRGQSIGQVQANDEDGGVD GIVLFSLPSSSLYFDVNKTTGVIFLKMDGSSSRSSSGLGGRSKRETRTMTLDVHAHSPLD TSRVTTAQLTIDVTNTSFGLGADLNVLLIIIIAVSLGVIVLLVVMAVVIFLVKSKRRRKN KGQDNRAVASGTSLQKLDDSKSGGSERIYHQTLPGYSGNQSGAGAGPYTRGGSLDPSHSS GRGSAEAAEDDEIRMINEYPRVASISSSMQEHISARGPDSGIQQDADQLSDISCEPAALE GSTWFKGKKLGGSLSGTMLSGQLPVYRDELGGGYLGLGRGLNISHPKDYAFPEDGKPSVD GSLTAIVASDEELRGSYNWDYLLNWCPQFQPLANVFTEIARLKDETAPQNQTNPRQPFQP KAKTDPKPRIDPPPLITAVAHPGAKSVPPKVPVIGRTFPHLATLRRSPISHEGSISSAAM SPSFSPSLSPLAARSPAVSPFGVTQGPSASMISTRDPSLDHSPDHEMRI NT seq 8070 nt NT seq  +upstreamnt  +downstreamnt atggtaccggcccagtttactgtcaacaaggagactggtcagctgtgttccagcacaaca ctggaccgagagcaggggtcaggcaactatgacctcactgtgaccgctactgatgggggt ggtctgagtgtggtggcccgtgtccgtgtgtatctggaggacattaatgacaaccgtcca tccttctatcccctactctacaccgtgagcctcagcacccacagcgcccccggaacctcc gtcaccaaggtgatggccaacgaccctgacgctggtgacaacggcagggtgacctatcgc acggtgccgggtggaggctccgccttcttcactctcaacaaagacacaggtgtgatctct cttgcgcggtcgcttcacagtaaggccaacaccctggtctccatggtgatctcggcgcag gatggcggcggtctgacggcgccggtaaacgcccgtgtcaacgtgagcgtggttggcggc tcggtggcgccccctctgtttgaccaggctcagtactactttacagtgtctgaggaggtc ctcaggggaactgaggtgggcaaggtccatgctgccaccaagactggtaattcccaggac atctcctactccatctcatcaggtgatccagatggttatttcaccatggactctacctcc ggggcgctccgctcctctctccctctggaccacgaggcctgtcccagtctcgacctggag gtccaggctcgctacggctcgccacccgcctacggaaccacacgcgtacgtgtaaccatc tcggacgtcaatgacaacgctccctccttcctcccctcctcctccgaatccctccttctc ccggaggtgactaagatgggaacggtggtgtaccgggtccaggccgctgaccgggactct ggtccaaacagtcagctgagttttgacctggtctcgatcggtgcggggggcaggatgttt ggtgtggaccggggaagcggggagctgcggctgattggtggactgaactacgagagtgtt ccgcgctacgacctacaggtggtagctaaagatggtggagtgccccagctcagctctacc tttacattagtggtccatgtccaggctcaggacgcgcagggccccgccttcgacacgcta acctaccgtgtggagctacaggagaacgcgcctctaaacacacgcttcctacaggtccgc gcccttaacagagaggctgctgggaacggcggaggctccacctcttcccactcctcttcc tcggtctcgtacagactgcgtccggacggtgacgcggcagggtttggggtcgccccagat agtgggtggttgtttgttcgcagcgctctggaccgggaggctaaggacatgtatctactg acggtgttggccacctctggaccaggagggcagggtgtggccggggcgggcaggactggc agtgccacggtgagggtctctgtaacagatgagaatgacaacagtccccgtctgagtcag gagagggtgtttctggctgtgagagagaaccttccggtgggtacggggttcggacgggtg tcggctgctgacagagacgcaggacagaacgccagactgacattcagactcctgcacact gacagacacttccagatcaactcacacacaggtgagatcagtactaggttatctctcgac agagagcagcagtctagctaccagctggtggttgtggtacaggatggcggcacaccccct cgcagcactacgggcaccgcccacatcaccgtattggatgagaatgacaacgcccctgtc tttagccacacccaccccgacagggaactgctcatacaggtgatggagggatcccagcct ggctcagtcttggggacagtaacagctaaagatcctgatgagggagagaacggaacactc cattactcactgtcaggttacggagtggagagtttctcgttgaaccctacctcaggagaa ctacgttactcctccccccacagacacagtgagagggctgattacaccctgaccgtgtca gcttcagacaacggcacccctccacaaacctctacctgtcctctacgcattcaggttctg agctccaataagtcctctgccaaaaacactctttccatgaccctcaactcagtggagggc attgccccaggctctgtcattggctctgtccggtcacatgaccagcgtgacccactctcg ttggatggccaggtgacgtacgtggtggtgggcgggacggaccagaaggggactttcatg gttgaccgggttacgggagacgtgtacctggttagagaactggactacgaggaaggggac aggtacactctgcatgtggaggtatcagatttctccctggtgtaccccagcagtcacaga gtacagctggtcattaacgtccaggacagcaatgaccacgccccccagttcactgaggac cccgttaccatagtgataccagagaacacccagccgggagcctccatctacaccttccag gctgctgataaggacggcggaggtcccaacagcgagttgcactactccatccagcaccgc tggcctgactcccttcacatcctgacccttgacccttccactggggtcctgaccttgggt cagaagttagatcacgagaccacaccctccctctacctggttgtcagggcgaccgaccag gcggaggacttgtccgcgcggcgctgggggtcagtgacggcccgggtgtttgtgacggac gaaaacgacaatgctcccgtattcagctcgccctccgccgtcagcgtcatggaggaccag cctgttgggttcgtcgttgtgtacgtgatggctcgtgacgaggatgagggagagaacgga cgagtgtcgtacagcatccaattggggaacagcgctggacgcttcagcctcaaccccaac accggctctctgtccattctgaaggctctagatcgtgaggaccaggaagtatttaatctg accatcatagctgaggatcatgggatgccgcagctgtccaccagtcaggtgttgtctgtc cacgtgattgatgtgaacgatgagctgccgctgttcctgggggatgagctagaggcagag gtcagagagaaccaggaagcgggtaccacggtgatcaccgtcacggcaacggacagagac caaggttctaatggtcaggtgacatacggaggagtaacagaggaaggcttcaccatcaac cctgtgacaggagtcatcaccaccaccaagaccctggacagagagactcaggaccactac acactaacagtgtatgccagggacgggggactgcctcccaacttcgccaaggtggtggtg cgtgttttggtgcaggacgagaacgacaacgtgccggtgttcgctaggccctggtacggc ctggaggtccctgagagccagagccccgtggagctgtggattgtcagggctactgacaca gacactggtcccgctggagacattcagtacaggatcactgctggagacccagacggggat ttccaactccatgtcagttcaggggccctgtccacgtctcgtcccctggatcgggagctg cgggcagggtacaccctggaggtggtggctctggaccatggttctcctgctctgagcagc acagccacagtggaggtgacagtgctggatgtaaacgacaacagcccagccttcagcagt aacagcttcaccatcgacgtctcggaagacgctgcccagggaactccggtcttagaggtg acggccacagacgcagacgagggggagaacgggaaggttatatatttcctgagtcgagag gcgaggggcgcgttcactgtcgacgaagacactgggcgtatcacaacggcatcgccgctg gaccgagagaagatagcgtcgtacagcttccatgtgttcgctgtggacctatcacctgca gagcccagaaacacctcagctcagataaccgtgatgatcctggacatgaacgacaacgct ccattcttcatccaagaccccctcgtcgtcgaggtctcggccagccaatcacagcgggtc ctggccaccatgcgggccgaggacaaggactttggcgccaacggctctgtgttctatcgt ttcgccgttccggtgaggggtttcagcatcaactctctaacgggggagatccaggggacg gaggggatagacaagctgagtcaggcccagaggaccctcatggtggaggctatggaccaa gggaccccggcccagtccagcctgggggtggtggtggtctatgtgaaggaacaggaatat acaggcatcaggttctcaaggaacgccagggacgtcagcatacaggagaacgctgccaaa ggaacggctgtagcccaggatcaagcccagtaccccgatggaactaagagaggcatcagc tacagcctcttctctgggaacagactgcaggccttcagcatcagcactggcacaggtgaa atctgggttcagaggtcgttgggtctggactttgaggacactccccgcctccgcctggta gtgaaggctgagacggcttcgtccagctccttcatggccgttaacctgatcctgcaggac atcaatgacaacctgccacgcttccagctccagaactatgtagcgtacatgagagaggct cagggttatgacaggccgatcatacaggtggtggcagaggacgtggaccaggggcagaac ggtcaggtgacctattccatccaatcatcaggaggcatgagcggcctgttcaagatcgac cctgtcacaggaagcatcaccaccgccgccatcatggacagagagatctggactcagacc aggctggtcgtcacagcgacggacaggggcaacccgcgattggccggttcggccacactc acggtgatcatcgtagacctcaacgacaacagtccaacaatccctctgcctcgggaggtc cgcatccctgagaacaccctgatcggcacagagatcaccttggtaacgggtaacgacgtg gactccagtccggccctgtcctacagcctccagctggacgggtcgtcccaggggaagttt gggatccaccgctacagtggaggggtgtctctgacctcccctttggactacgaggacagg acctggtacacgctaaccatcagggctacggactcccaacaccagactgaggctaatatc accgtactggtggaggacgtcaatgataacgctcctgcgttcacacaggatctataccag gtaacactgccagaacattccccgccaggcagtcccgttgtcacggtgacagcgactgac cgtgattcgggggagaatggaaaggtcacctacagagtgatgtcatcgacgcgaggtggc ttctatgtcgaccccagcaacggcaccctgttcatcagggagagggcagagtttgaccca gagaacccgtccgtcagtgtggtcatcgaagcctgtgacgggggctccccgcccctctcc tccgtcaccacagtacaggtccagctatcagacgtcaacgacaacgctcctgtcttccac caatcagagtacagggcgacggtgtcggaggactccatccccggggcgaccattctgacc ctggaggcgatggatgctgatttctctcgggacaactgtggcttcgacttcgccatcgcc aggggcaacactgggaacgtcttccagatcgagagcagcgtgcgcttcctggaggggcgg ggcttccagaccgtagggactctcctattggccgaggagctggacttcgaggccatgccc ctctataacctgacggtggtggtgtcggacagaggggttccacagcggagttctagcgtt gccgcggtgataaccgttggtgacgtaaacgataacccgccggcgttcggcagggcggag tacgttgtgtcactgagtgaaggagcgggcgctgggacagagatattacgactcactgcc acagacccagactcggcccccaacgcagaggtccagtacagtatcagctcaggcgatgag atggacctgttcacaatcgaccagtggaccggggcgctgcggttacagcgaccgctcgac cgcgagcaccagtcctcccacgtggtcatcgtccaggcctcggatggccgtggtcacgtc gccctggccccaatcagcgtagaggtcaaagatgtgaacgataacagaccgttcttcccc gtcgagactctgaccgctagcatcagagagaaccagccggtcaactcagctgtgaccata ctccacgccatagaccatgacactgggatgtacggccagctgagatactacatggtggag cgaggtcaagggtcaggagtcacagggcgagaggccttcaccgtggaccaaagttcagga gaggtcagggctaagatgacttttgactttgagaaggtcaactcatttaatttcgttgct ctggcgatggacgccggtaaccactcggccacggtgacggtccaggtgtacgtgaccggt gaggatgagtacgacccgctcttcgtctccccagagttctccttcgaggttccggagggg gcgaagaggggccagagcatcggacaggtccaggcgaatgacgaggacggaggtgtagac ggtatcgtcctcttctcgctccctagctcctccctgtactttgacgtcaacaaaacaacc ggtgtgatattcctcaagatggacgggtcttctagtcgtagcagcagcgggttagggggg cggtcaaaaagggagaccaggaccatgactctggacgttcacgcccacagccctctggac acgtcccgtgtcaccacggcccagctgaccatcgacgtgaccaacacgtccttcggcctg ggggcagacctcaacgtcctgctgatcatcatcatcgcagtgtccctgggggtcatcgtg ctcctagtggtcatggctgtggtcatctttctggtcaagtcaaagagacgcaggaagaac aaaggacaggacaacagggccgtggcctcgggaacctctctgcagaaactggacgattcc aaatctggaggatccgagaggatctatcatcagacgttaccagggtactctggcaaccag agtggagcaggggccgggccctacacccgggggggctcccttgacccctcacactccagc gggcgtggctcagccgaggcggcggaggacgatgagatcaggatgatcaacgagtacccc cgcgtagcgtccatctcctcatccatgcaggagcacatctcagcccgcgggccggactct ggcatccagcaggacgctgaccagctgtctgacatctcctgtgagccggccgccctggaa ggaagcacctggttcaaaggcaagaagctgggagggagtctcagcggaaccatgctgtct ggacagctgcctgtctacagagacgagctgggaggagggtacctggggctggggagggga ctcaacatctcccatcctaaagattacgccttcccagaggacgggaagccctcggtggat gggtctctgacagccatagtggccagcgacgaggagctgaggggcagttataactgggac tacctgctcaactggtgccctcagttccaaccactagccaacgtcttcacagagatcgcc aggctcaaagacgagacggccccacagaaccagaccaacccgcgccagcccttccagccc aaagccaagacggaccccaagcctcgcatcgacccaccgcccctcatcaccgccgtggcc caccccggggccaagtccgtccccccgaaggtccctgtcatcggacgcaccttcccccac ctggccaccctacgacggtcccccataagccacgagggctccatctcctcagcagcaatg tcccccagcttctccccctctctctcccccctcgccgcccgctcccccgccgtctccccc ttcggagtcacccagggcccctcggcctccatgatcagcaccagggacccctcgctggac cacagccccgaccatgagatgaggatctga

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