KEGG   Coregonus clupeaformis (lake whitefish): 121542157
Entry
121542157         CDS       T08357                                 
Symbol
exosc9
Name
(RefSeq) exosome complex component RRP45
  KO
K03678  exosome complex component RRP45
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    121542157 (exosc9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cclu03019]
    121542157 (exosc9)
Messenger RNA biogenesis [BR:cclu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     121542157 (exosc9)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C CCD97-like_C Nop14
Other DBs
NCBI-GeneID: 121542157
NCBI-ProteinID: XP_045064193
LinkDB
Position
27:complement(51376061..51382294)
AA seq 429 aa
MRDTPLSNCERDFLLKAIEEKKRLDGRQTYDYRSIKISFGTDYGCCFVDLGKTRIMAQVS
CELITPKENRPNEGIMFFNIELSPMASPAFETGRQSELLVKLNRQLERCLRNSKCIDTES
LCVVSGEKVWQIRVDIHLLNHDGNLMDAASIAAITALCHFRRPDVGIQGEEVTVYSTEER
DPIPLSIYHMPICVSFSFFQQGTYLLVDPCEREERVMDGLLMIAMNKHREICSIQSSGGI
MLLKDQVLRCSKIASVKVSEITELINKALENDKKARKTGGKFGFAESLPQERITALKTDV
SPVEMTDVKEKANEIVQRAELPPQTVPSPVLTAPCTGQVGEGLESSWGLEEEEEEEEEEE
EEEEEETMELEEGHGEEEKGKGDVVVISDSGSEEEDVVILNQETKEKASSSNQQGAVASK
QQQKKKKKK
NT seq 1290 nt   +upstreamnt  +downstreamnt
atgagagatacaccgttatcaaactgcgagcgagattttttactcaaagctattgaagag
aaaaagcgcttggatgggagacagacctatgactacaggagcatcaagatctcgttcggg
acagattatggatgctgctttgttgacctggggaagacgaggatcatggcccaggtgtcc
tgtgagctcattaccccgaaagagaatagaccgaatgaaggaatcatgttcttcaacatt
gagctgtctcccatggcttcaccagcatttgagactggcaggcagtcagagctgttagtg
aagctgaacagacagttggagagatgcctcaggaactccaagtgtatagacacagagtct
ttgtgtgtggtgtctggagagaaggtgtggcagattagggtggacatccacttgctgaac
cacgatggtaacctgatggacgctgccagcattgctgccattacggctctctgtcacttc
agacgccccgatgtaggcatccaaggagaggaggtcaccgtgtacagtacggaggagaga
gaccccattcccctcagcatctaccacatgcccatctgtgtcagtttctccttcttccaa
caagggacctacctgttggttgacccgtgtgagcgtgaggagcgtgtgatggacggcctg
ctgatgatagccatgaacaaacacagagagatctgctccatccagtctagtggaggcatc
atgctgctcaaagaccaggtcctcaggtgcagtaagatcgctagtgtgaaagtgtcagag
atcacagagctcatcaacaaagccttggagaacgacaagaaagccagaaaaactgggggt
aagtttgggttcgcagagtcgttgccccaggagcgaatcacagcgctgaaaacagacgta
tcacctgtggaaatgactgacgtcaaggagaaggccaatgagatcgtccagagagcagag
ctcccaccccaaaccgttccctctccagtgttaactgccccatgtacaggccaggtgggg
gaggggctagagagctcctggggactggaggaggaggaggaggaggaggaagaggaagag
gaagaggaagaggaggagaccatggagttggaagagggacatggggaggaggagaagggg
aaaggtgatgtggtggtcatctcagacagtggcagcgaggaagaggatgttgtcatcttg
aaccaggaaacaaaggagaaggcctccagctctaaccaacagggggcagtagcctccaag
cagcagcagaaaaagaagaagaagaagtga

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