Coregonus clupeaformis (lake whitefish): 121542157
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Entry
121542157 CDS
T08357
Symbol
exosc9
Name
(RefSeq) exosome complex component RRP45
KO
K03678
exosome complex component RRP45
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121542157 (exosc9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121542157 (exosc9)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121542157 (exosc9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
CCD97-like_C
Nop14
Motif
Other DBs
NCBI-GeneID:
121542157
NCBI-ProteinID:
XP_045064193
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Position
27:complement(51376061..51382294)
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AA seq
429 aa
AA seq
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MRDTPLSNCERDFLLKAIEEKKRLDGRQTYDYRSIKISFGTDYGCCFVDLGKTRIMAQVS
CELITPKENRPNEGIMFFNIELSPMASPAFETGRQSELLVKLNRQLERCLRNSKCIDTES
LCVVSGEKVWQIRVDIHLLNHDGNLMDAASIAAITALCHFRRPDVGIQGEEVTVYSTEER
DPIPLSIYHMPICVSFSFFQQGTYLLVDPCEREERVMDGLLMIAMNKHREICSIQSSGGI
MLLKDQVLRCSKIASVKVSEITELINKALENDKKARKTGGKFGFAESLPQERITALKTDV
SPVEMTDVKEKANEIVQRAELPPQTVPSPVLTAPCTGQVGEGLESSWGLEEEEEEEEEEE
EEEEEETMELEEGHGEEEKGKGDVVVISDSGSEEEDVVILNQETKEKASSSNQQGAVASK
QQQKKKKKK
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagagatacaccgttatcaaactgcgagcgagattttttactcaaagctattgaagag
aaaaagcgcttggatgggagacagacctatgactacaggagcatcaagatctcgttcggg
acagattatggatgctgctttgttgacctggggaagacgaggatcatggcccaggtgtcc
tgtgagctcattaccccgaaagagaatagaccgaatgaaggaatcatgttcttcaacatt
gagctgtctcccatggcttcaccagcatttgagactggcaggcagtcagagctgttagtg
aagctgaacagacagttggagagatgcctcaggaactccaagtgtatagacacagagtct
ttgtgtgtggtgtctggagagaaggtgtggcagattagggtggacatccacttgctgaac
cacgatggtaacctgatggacgctgccagcattgctgccattacggctctctgtcacttc
agacgccccgatgtaggcatccaaggagaggaggtcaccgtgtacagtacggaggagaga
gaccccattcccctcagcatctaccacatgcccatctgtgtcagtttctccttcttccaa
caagggacctacctgttggttgacccgtgtgagcgtgaggagcgtgtgatggacggcctg
ctgatgatagccatgaacaaacacagagagatctgctccatccagtctagtggaggcatc
atgctgctcaaagaccaggtcctcaggtgcagtaagatcgctagtgtgaaagtgtcagag
atcacagagctcatcaacaaagccttggagaacgacaagaaagccagaaaaactgggggt
aagtttgggttcgcagagtcgttgccccaggagcgaatcacagcgctgaaaacagacgta
tcacctgtggaaatgactgacgtcaaggagaaggccaatgagatcgtccagagagcagag
ctcccaccccaaaccgttccctctccagtgttaactgccccatgtacaggccaggtgggg
gaggggctagagagctcctggggactggaggaggaggaggaggaggaggaagaggaagag
gaagaggaagaggaggagaccatggagttggaagagggacatggggaggaggagaagggg
aaaggtgatgtggtggtcatctcagacagtggcagcgaggaagaggatgttgtcatcttg
aaccaggaaacaaaggagaaggcctccagctctaaccaacagggggcagtagcctccaag
cagcagcagaaaaagaagaagaagaagtga
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