Coregonus clupeaformis (lake whitefish): 121542195
Help
Entry
121542195 CDS
T08357
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1-like
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121542195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121542195
Enzymes [BR:
cclu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
121542195
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121542195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
TniB
ATP_bind_1
AAA_16
AAA_18
AAA_22
MMR_HSR1
CbiA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
121542195
NCBI-ProteinID:
XP_041707608
LinkDB
All DBs
Position
3:23013183..23017820
Genome browser
AA seq
445 aa
AA seq
DB search
MTTEGPEKTGEEGVGAGAGVGGGGTRFDLEKETELRFEVEAGEKVQLELLTGLAEVFGSE
LNRNKKYTFGPGSKIAVFTWQGCSVSLSGKTEVAYVSKDTPMLLYLNAHTALEQMRRQAE
RDNEKGPRVMVVGPTDVGKSTVCRLLLSYAVRLGRRPTLVELDVGQSGVSVPGTMSALCI
ERPADVEEGYSVQAPLVYHFGSTTPGTNIKLYNKLTSCLADVFSQRCEVNRKASVGGCII
NTCGWVKGSGYQALVHCASAFEVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVER
SKDCRREARDEKIREYFYGFRSASFFPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDD
TQLKLVPVTPGRDLTHHVLSVSCADDGEEGAGGVRRGVLESPVCGFIVVTNVDTQAQVMT
VLSPAPRPLPRHTLLIMDIRFIDLK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgacgactgagggcccagagaagactggtgaggagggagtgggggctggggctggcgtt
ggtggcggggggacgaggtttgacctggagaaggagaccgagctgcggttcgaggtggag
gctggggagaaggtgcagctggagctgctcacaggattggcagaggtctttggctctgag
ctcaaccgcaacaagaagtacacgtttggaccagggtccaagattgctgtgttcacctgg
cagggctgtagtgtttctctctcggggaagacagaggtggcgtacgtatcaaaggacaca
cccatgctgctctacctgaacgcacacactgcactggaacagatgagacgacaggcggag
agagacaacgagaagggaccacgggtaatggtggtggggcctacagatgtggggaagtcg
acggtgtgcaggctgttgctgagctacgctgtcaggctgggcaggaggcccacactggtg
gagctggatgtgggccagagtggggtgtcagtcccgggcacaatgtcagcgctgtgtatt
gagcgtccggctgacgtggaggaggggtactcagtacaggctccactggtctaccacttt
ggctccaccactccaggaaccaacatcaaactctacaacaagttgacgtcgtgtctggcc
gacgtgttctcccagcgctgtgaggtgaacaggaaggccagtgtgggcggctgcatcatc
aacacctgtggctgggtgaagggttctggctaccaggccctggtccactgtgcctcagcc
ttcgaggtggatgtggttctggtgctggaccaggagaggctttacaacgagctgaagcgg
gacctaccgcactttgtccgagttgtgctgctacccaaatccggaggggtcgtggagcgc
tccaaagactgccggcgtgaagctcgggacgagaagatccgggagtacttctatggtttc
cgcagtgcctcgttcttccctcacgccttcgacgtgcgcttttctgatgtgcgcatctac
aagatcggagcgccttccatcccggactcatgcctgcctctagggatgtcgcaggacgac
acccagctgaagctagtccctgtgacccccggtcgcgacctcacacaccacgtgctgagt
gtaagctgtgccgatgacggggaggagggggctggaggggtgcgcaggggtgtgctggag
agcccggtgtgtgggttcattgtggtgactaacgtggacacacaggcacaggtgatgacc
gtgctctcgcccgcccccagacccctccccagacacacactgctcatcatggacattcgc
ttcatcgacctcaaatag
DBGET
integrated database retrieval system
