Coregonus clupeaformis (lake whitefish): 121542209
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Entry
121542209 CDS
T08357
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like isoform X1
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121542209
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
121542209
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
121542209
NCBI-ProteinID:
XP_045064022
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All DBs
Position
27:24338007..24464080
Genome browser
AA seq
2172 aa
AA seq
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MTTAANWVANGASLEDCHSNLFSLAELTGIKWRCYSFRGGGEYGPVISAPAQDDPVLRSF
MRCVQANLLCVWRRKVKPEAKELWIFWWGDKPNLADVIHHELEVAEEGLWECGLSYECRT
LLFKAIHNLLERCLMDKDFVRIGKWFVKPYDLEEKHLGTSEHLSCSFTFFLHGESNVCTS
VEVAQHQPAYHITDDHTYLAQISSAPVQVILSPYGLAGSLTGQAYKMSDPAVRKLMEEWS
YFYPMVLQRHREGGTGGAGTGGMGAEREGTDRPYDPHSHVAVEVIVGGVRMIYPAAFVLV
AQGDLPVEEPPPAPGAQGASRDPSHCSIPLTPPTSPEQPCSADSGFVTTVSSVLPAQESA
MGVTNHSPKHSEKKLTNQVVHQAWKECYLNQLQHKCSVPNSVTPKKEAPNGVTTWDFTDP
EERAPCSCSRLKQQKQQQQTNTSSANPPSGANITPSSGPALPPPSLPKHKAMDKPEKADK
QPKRAAAMTPFHHRLSVGQEACLEQDSSGGSQLGLVALDPPLDPMPSCKYTKPLSTGRKA
PESLLHSPVSPLPPTLSPHPRVGQDPEVLDASLGMAPCPDGASGMGVMEPSETALYAAPL
GPREAGAGWWRGFRTPRADKAEFRPPELPSDRVEVKTETQATEGVALKRLFMQTQKRFKI
SEECVREHIQTLGVLQQPGVEGLGDPGDDPYDFKEGDIEYSFPTSKRLKGQGRDPSKRGP
KGEEISNGALPDGKDAMSIFSSAPKADDDSPQDDDAAAKAQNPSLTRETDLVVLISDLEN
IFDEDEEELGTACPNQHTARVLVSGSEDRREGRVAVPYPSTVADLQRMFPTPPSLEQHPA
FSPIMTYRDTPSQEPPAPSGGSDHPLGPLSSTQLQEYRMEVEEGMASPKPEDIKDFSFVY
RVPSVQPQMGCSMFAPLRTLPSQCLPPLKVPDQCYYRPSWALLPKMEHYSSLPPSHHASF
IKDGYVNVPSVGDQEYAQMSASALSMGTTGGILPSPSPATPRFSVHTPRTPRTPRGIGTA
SGQGSVKQEGTGTELSSPASTPSTSLPMSSVAEPHTSGPPIPEAHSLYAALLLSDSVLNV
FKDRNFDSCCICACNMNVKGADVGVYIPDSTLEDQYRCMCGFSAIVNRRLAHGTGLFLED
ELDIFGRGSEVGQAAERRLALCRRDPPMGDPRAKRPQDSSPAPSSVMVLLQQQCSQPISS
LASMHLPPSCSCNGRQGALLQSWMSDKQWVDGSDTCVECYNALVQGQQYVDNPAGGKVDP
AVVRSSALHSWPHTNMLDISMLASQDVVRMLLSLQPYLQDAIQKKRMGRTWENIQHVQGP
LTWQQFHKMAGRGSYGSEESPEPLPIPTLLLGYYDYYDRNFLALSPLALPFWEKLLLEPY
GGQRDVAFLVLCPNSDTLLAGAQVFFQELSAVYETCRLGKHRPLAKVSKDGLVRVGAVDT
ETETEKEKEKERQEEEQVGQWFTGPWAGPQHIDNLRKLQLYARACRKHLGPQLSALSLDS
SLFIPPKHQPHLAPTPSSAQPAPSSSQPPSGPGVPAEGEPATPPAAPSSGSTRTPTPTAA
ASCQPGPAEITQGGAAEAKSTPNATLPPLPPSQPAETPESLAERERIGIPTLADSADSHA
HPPAIVIYVVDPFLCSGGARDGGGGGGEEEEGEEVEGGSVWLLGLLRCYTEMLQTLPESI
RPALVLQVVPCQYLLQPASGESPLYLQHLRSLAFSTYSQCRRLLPTQTHIKSLTGFGPAS
TLESVLKSPEHPSPLLGYSPLYILGPTRAKQPEPGEVWAEIPPRYNVLFVGYCLSHDQRW
ILVSCTDQQGELLETCIINIDVPNRARRPKVSARKMGLQKLWDWCVGIIQMTSLPWRIVI
GRLGRLGHGELKDWSVLLGEHSLHSISRQLKEACRMCGISSADSPSILSACLVAMEPQGS
IVVMPDAVTMGSVFGRSTALNLQTSQLNTPQDASCTHILVFPTSATTQLAASSYPTEDNA
DDMFDLPFPDELENDIGHDILNLHPSPNTSPVPSPGSPSGMGGSSHFQHNRSQGERLLSR
ENPPEELKQQPLALGYYVSTAQADSLPHWFWASCPQAQNQCPLFLKASLHHHISIATAQS
DEPNQTSSDKTTKRTAHPLDSKTTSDVLRFVLEQYNALSWLTCNPATQDRRSCLPVHLAV
LTQMYNAVLNML
NT seq
6519 nt
NT seq
+upstream
nt +downstream
nt
atgactacagcagcgaattgggtggctaacggggcaagccttgaagactgccactccaac
ctcttctctctggcggagttgacgggcatcaaatggcggtgctacagcttccgcggcggt
ggcgagtacgggccggtgatctcagcgccggcacaggacgacccggtgctgcgcagcttc
atgcgctgtgtgcaggctaacctgctgtgtgtgtggcgccgcaaagtcaagcctgaagcc
aaggagctgtggatcttctggtggggcgacaagcccaacctcgccgacgtcatccatcac
gagctggaagtggctgaggagggactatgggagtgtgggctgtcatatgaatgcaggacc
ctcctgttcaaggccattcacaacctgctggagaggtgtctgatggacaaggactttgtg
cggatcgggaagtggtttgtcaagccatacgatctggaggagaagcatctgggcaccagt
gagcacctgtcgtgctccttcaccttcttcctgcatggggagagtaatgtgtgcaccagc
gtagaagttgcccagcatcagcctgcctaccacatcactgacgaccacacctacctggcc
cagatctcctcagcccccgtacaagtgatcttgagtccgtacggtctggcgggctccctg
acgggccaagcctataagatgagtgacccagctgtaagaaaactgatggaggagtggagc
tacttctaccccatggtgctgcagcgccacagagaagggggcacagggggcgcaggcacg
gggggcatgggcgccgagagggagggcactgaccgaccatatgacccacacagccatgtg
gccgtcgaggtcatcgtaggtggtgtgaggatgatctatccagcagcctttgtgctggtt
gcccaaggcgacctgcctgtggaggagcccccacctgcaccaggagcccagggggccagc
agagacccctcccactgcagcatccccctcaccccccccacctcacctgaacagccctgc
tcagcggacagtggctttgtgacaacagtgtccagcgtcctccctgcccaggagagtgcc
atgggggtcaccaaccacagcccaaagcattctgagaagaaactgaccaatcaggtggtg
catcaggcatggaaggagtgttatctcaaccaactgcaacacaaatgcagtgtgcccaat
agcgtgacgccaaagaaggaggcgccaaatggggtgaccacctgggacttcaccgaccca
gaggagagggcaccctgcagctgctccaggttaaagcagcagaaacagcagcagcagacc
aacacctcctctgccaaccctccttctggtgccaacatcaccccctcctctggcccagcc
ctcccccctccctccctgcccaagcacaaggccatggacaagcctgagaaagccgacaaa
cagccgaagagagccgccgccatgacccccttccaccaccgcctctctgtgggccaggag
gcctgcctggaacaagactcatctggagggtcccagctcggcctagtcgccctggaccct
cccctggatcccatgcccagctgcaagtacaccaagcccctctccactggcaggaaagct
ccagagtccctgctccactcccctgtctccccattaccccccacgctcagcccccatcca
cgggtgggacaggaccccgaggtactggacgcctctctgggcatggccccctgtccggat
ggggcgtcagggatgggggtgatggagcccagtgagacggctctgtatgcagcccctctg
gggcccagggaggctggggcaggctggtggaggggctttaggactcccagggctgataag
gctgagttcaggcctccagagctccccagtgacagagtggaagtaaagacagagacgcag
gccactgagggagttgcactgaagagactattcatgcagacacagaagcgcttcaagatc
tctgaggagtgtgtgagggaacacatccagaccctgggtgtcctgcagcagcctggggtg
gaggggctgggggaccctggggacgacccctacgacttcaaggagggagacattgagtac
agcttccccacctccaagagactgaagggccagggccgagaccccagcaaaagaggcccc
aaaggagaggagatcagcaacggtgcactgcctgatgggaaagacgccatgtcaatcttt
agctctgctcccaaagctgatgatgactcaccacaggacgacgatgcggcggccaaagcc
caaaacccttctctaaccagggagactgatctggtggtcctcatctcagacctggagaac
atcttcgacgaggatgaggaggaacttgggactgcttgccccaaccagcacacagccagg
gtcctggtatcaggaagtgaagatcggagggaggggagggtggctgtgccctatccttca
acagtagcagacctccagcggatgttccccacacccccgtccctggagcagcacccggcc
ttctcccccatcatgacataccgcgacacccccagccaagagcccccggccccctcgggg
ggctccgaccaccccctgggccccctgtcctccacccagctccaggagtaccggatggag
gtggaagagggcatggccagtcccaaacctgaggacatcaaggacttctcatttgtgtac
cgtgtcccctccgtccagccacagatgggctgctccatgtttgctccgctgcggaccctc
cccagccagtgtctgccccccctcaaggtgcctgaccagtgttactaccggccctcctgg
gccctgctgcccaagatggagcactactcctccctgccgccctctcatcacgcctccttc
atcaaagatggatatgtcaacgtccccagtgttggggaccaggagtatgcccagatgagt
gccagcgccctgtccatgggcaccaccggtggcatcctcccctcgccctcccctgccacc
ccccgcttctctgtccacacccctcgtaccccccgcacccccaggggcataggcacggcc
agcgggcagggctcggtgaagcaggagggcaccgggacagagctgagctcccctgcctcc
acgccctccaccagcctgcctatgagctccgtagctgagccccatacgtccggcccccca
atacccgaggcccacagcctgtacgccgccctgctcctctctgactcggtcctcaacgtc
ttcaaagaccgcaacttcgacagctgctgcatctgcgcctgcaacatgaatgtgaagggc
gccgacgtgggtgtgtacatccccgactccacgctcgaggaccagtaccgctgcatgtgc
ggcttcagcgccatcgtcaaccgtcggctggcccacggcacaggcctcttcctggaggac
gagctggacatctttggtaggggctcggaggtgggccaggcggccgagaggagactggcg
ctgtgccgcagagacccacccatgggagacccccgggccaagcgcccccaggactcctcc
cctgccccttcctctgtcatggtgctcctccagcagcagtgctcccagcccatctcctcc
ctggcctccatgcacctccctccttcctgctcctgcaacggccgccagggagccctgctc
cagagctggatgtctgacaagcagtgggtggatggcagtgatacgtgtgtggagtgttac
aacgcgctggtacaggggcagcagtatgtggataaccccgccggagggaaagtagatccg
gctgttgtgaggagcagcgctctacactcctggcctcacaccaatatgctggacatcagt
atgctggcatcccaggacgtggtgcgtatgctgctgtccctgcagccctacctccaggac
gccatccagaagaaacggatgggccggacctgggagaacatccagcacgtacagggaccg
ctcacatggcaacagttccacaagatggctggacgaggctcctacgggtctgaggagtcg
ccagagcctctgcctattcccaccctgttgttgggctattacgactactacgaccgtaac
ttcctggcgctgtcgcccctggcgctgcccttctgggagaagctgctgttggaaccgtac
gggggacagagagacgtggccttcctggtgctctgtcccaactctgacaccctgctggcc
ggggcacaagtcttcttccaggagctcagcgctgtctacgagacatgccggttggggaaa
cacagacccctggccaaggtgtccaaagatggcctggtgcgtgtgggggcagtggacaca
gagacagaaacagagaaggagaaagagaaggagaggcaggaggaggagcaggtaggccag
tggttcacagggccctgggctggaccgcaacacatcgacaacctcagaaaacttcaactc
tacgcccgagcctgcagaaagcatctaggtccacagttgtctgccctatctttggacagc
agcctgtttataccccccaagcatcagcctcacttagcccctacgccctcttcagcccag
cctgccccctcctccagccagcccccctctggccccggggtccctgctgagggagagcca
gcgacccccccagcagcccctagctcaggaagcacccgcacccccacccccacggcagca
gcctcatgccaaccaggcccagcagagattacccaaggaggggccgctgaggccaagagt
acccccaacgccacactaccaccactcccacctagccagccagcagagacccctgagagt
ttggcggaacgggagcgaatcggcatccccacgctggcggattcggccgatagccacgcc
caccccccggccatcgtgatctatgtggtggaccccttcctgtgctcaggtggagcgagg
gatggcggaggaggaggtggagaggaggaggagggagaggaggtggaggggggcagtgtg
tggttactagggctgctgcgttgctacacagagatgctacagacattgccggagagcata
agaccagctctggtcttacaggtggtgccatgtcagtacctgctccagccagccagtggt
gagagccctctgtacctgcagcacctgcgctccctggccttctcaacctactcccagtgc
agacgcctcctacccacacagacacacatcaagtctctgaccggtttcggccccgcctcc
accctagaatctgtgctcaagagcccagagcaccccagccctctactgggctactctccc
ctgtacatcctgggtcctacccgtgccaagcagccggagccaggggaggtgtgggcagag
atccctcccaggtacaacgtgctgtttgtgggctactgcctgtcccacgaccagcgctgg
atcctggtctcctgcaccgaccaacagggagagctactggagacctgcatcatcaacatc
gacgtgcccaacagagcgcggcggcccaaggtctcggccaggaagatggggctgcagaag
ttatgggactggtgtgtcggcatcatccagatgacctcgctgccatggaggatcgtgatt
ggtcggctgggcagactaggacacggggaactgaaagactggagcgttctcctgggggag
cactccctccactccatcagtcgccagctgaaggaagcgtgtcgtatgtgcggcatctcc
tccgcagactccccctccatcctcagcgcctgcctggttgccatggagccccagggctcc
atcgtggtgatgccagatgcggttacaatgggctcggtgtttggtcgcagcactgccctc
aacctgcagacgtcccagctgaacacccctcaggatgcttcctgtacccacatcttggta
ttccccacctccgccaccacccagctggccgccagctcctaccccacagaggacaacgct
gacgacatgttcgacctgcctttccctgacgagctggagaatgacataggacatgacatt
ctcaaccttcacccctcccccaacacctcccctgtaccctcccctggctccccctctggc
atggggggaagctcacacttccagcataacaggagtcagggagagaggcttctgtccagg
gagaaccctccagaggagctgaagcagcagcctctagccctgggatactacgtctccact
gcccaggccgacagcctgcctcactggttctgggcctcctgccctcaggctcagaaccag
tgtccactcttcctcaaggcatccctacaccaccacatctccatcgccacagcccaatca
gatgagcccaaccagacgagctcagacaagacgactaagaggacggctcaccctctggac
tccaagaccacctctgacgtgctcaggtttgtgttggagcagtacaacgccctctcgtgg
ctgacgtgtaaccctgccacccaggaccgccgctcctgcctgcctgtccacctagccgtg
ctcacacagatgtacaatgccgtcctcaacatgctttag
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