Coregonus clupeaformis (lake whitefish): 121542279
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Entry
121542279 CDS
T08357
Symbol
ssrp1a
Name
(RefSeq) FACT complex subunit SSRP1a isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121542279 (ssrp1a)
03036 Chromosome and associated proteins [BR:
cclu03036
]
121542279 (ssrp1a)
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
121542279 (ssrp1a)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
121542279 (ssrp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
SSrecog
POB3_N
HMG_box
HMG_box_2
SSRP1_C
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121542279
NCBI-ProteinID:
XP_041707632
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Position
3:23170974..23190342
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AA seq
713 aa
AA seq
DB search
MGDTLEFNEIYQESKGSWNDGRLRFSKQNLVYKSSKTGKVDNIPAAELSVATWRRVCLGH
GIKLATSTGHVYKYDGFRDTDYERISEFFKANYKVELTEKDMCVKGWNWGTAKFSGPLLS
FDVNDSSVFEIPLASVSQCATGKNEVTLEFHQNDDAEVSLMEVRFYVPPGTADEGADPVE
AFAQNVRSKADVIQATGDAVCVFKELQCLTPRGRYDILIYPAFLHLHGKTFDYKIPYTTV
LRLFLLPSKDQRQMFFVISLDPPIKQGQTRYHFLILHFSKEEELHLTLNMSEEEVEKRYE
GKLSKNMSGSLYEMVSRVMKALVNRKITVPGNFQGNTPGAQCITCSYKAQSGLLYPLERG
FIYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEVETKQGNQFTFSSIEREEYGKLFDFV
NAKKLDIKNRGFKEKKAKNNEYSDSDDDQHDAYLERMKAEGKIREEGDGSNDSDEETDES
FNPGEESDVAEEYDSNASESDSGSGGDGSDEEGKKKKPAKKAKVVKETKERKPRKEKKQK
DTNAPKRPMSSYMLWLNSSRERIKSENPGISITEISKKAGEMWKQIGKDDKEEWDGKADE
AKKNYEKAMKEYRENGGGSSTPAKRESKKKAGGKKEDKKRKSGGVEKEKEQGGNDSFKSR
EFISSEESSSDGERKKAKKAKKAKGKPQRKGKESDEEEEEAMTTPPSSEEDSD
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgggagacacgctggagttcaacgagatctaccaggaatccaaggggtcctggaacgac
ggtcgtctgcggttcagtaagcagaatctggtgtataagagcagtaagacggggaaggtg
gacaacatcccggcagcagagctgtctgtggccacatggaggcgtgtgtgtctgggacac
ggcatcaaactggccaccagcaccggacatgtctacaaatatgacggcttcagagacacg
gattatgagaggatctctgagttcttcaaggccaactacaaggtggagctgacagagaag
gacatgtgtgtgaagggctggaactggggcactgctaaattctctggtccattgttgtcg
tttgacgtgaatgacagctcagtgtttgagatccccctggccagcgtgtcccagtgtgcc
acaggaaagaacgaggtgacgctggagttccaccagaacgatgacgctgaggtctctctt
atggaggtccgcttctacgtcccccctggcaccgcagacgagggggcagaccccgtggag
gcgtttgcccagaacgtgcggtctaaggcagatgtgatccaggctacaggagatgctgtg
tgtgtcttcaaagagctgcagtgcctcacacccaggggcaggtatgatatccttatctac
cctgccttcctccacctccatggtaagacttttgactacaagatcccctacactaccgtg
ctgcgtctcttcctgttaccaagcaaggaccagaggcagatgttctttgtgatcagtctg
gacccgcccatcaagcagggacagacgcgttaccacttcctcatcctgcacttctctaag
gaggaggagctccacctcaccctcaacatgagcgaggaggaggtggagaagcgttatgaa
gggaaactcagtaagaacatgtccggttctctctatgagatggtcagtagggtgatgaaa
gctctggtcaacaggaagatcaccgtgcccggaaacttccagggtaacacccctggggcc
cagtgtataacatgttcctacaaggcgcagtcaggcctgctctaccccctggagaggggt
ttcatctacgtgcacaagccccccgtgcacctgcgcttcgaggagatctcctgtgtcaac
ttcgccagaggcaccaccacaacgcgctccttcgacttcgaggtggagaccaagcagggc
aaccagtttaccttcagcagcatagagagagaagagtacgggaagctgtttgactttgta
aacgccaagaaactcgacatcaagaacagaggattcaaggagaagaaggcaaagaacaac
gagtacagtgactcagacgacgaccagcacgatgcctacctggagaggatgaaagccgag
ggcaagatcagagaggaaggagacggcagcaacgactcagacgaagagaccgatgagtct
ttcaaccctggagaggagagtgatgtcgctgaggagtatgacagtaacgcgtcggagagc
gacagcggcagcgggggggatggcagcgatgaggagggaaagaagaagaaacctgcaaag
aaggccaaagtagtgaaagagacgaaggagaggaaaccacgtaaagagaagaagcagaag
gacactaacgcccccaagaggccgatgagttcctacatgctgtggctcaactccagccgc
gagcgcatcaagtcggaaaaccccggaatctccatcacagagatctccaagaaggcagga
gagatgtggaaacagatagggaaggacgacaaagaggagtgggacgggaaggcagacgag
gctaagaagaactatgagaaagccatgaaggaatacagagagaatggtggaggctcctcc
acacccgccaagagggagagcaagaagaaggcgggaggcaagaaggaggacaagaagagg
aagtctggaggagtagagaaggaaaaggagcaaggagggaacgacagttttaagagccga
gagtttatctccagcgaggagagttcgtctgacggtgaacgcaagaaagccaagaaggcc
aagaaagccaaaggcaaaccccagaggaagggcaaggagtctgatgaggaagaagaggaa
gcgatgaccacaccccccagctctgaagaggactctgactga
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