Coregonus clupeaformis (lake whitefish): 121542358
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Entry
121542358 CDS
T08357
Name
(RefSeq) iroquois-class homeodomain protein irx-1-like
KO
K24889
iroquois-class homeodomain protein IRX
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121542358
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
121542358
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
MRP-S32
Motif
Other DBs
NCBI-GeneID:
121542358
NCBI-ProteinID:
XP_045064311
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All DBs
Position
28:8201364..8205453
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AA seq
463 aa
AA seq
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MSFPQLGYPQYLSASQVVYGGDRPGVLTPSSRGGSSEIAGNQSAAAAAVTSVLGMYANPY
TAHNYSAFLPYSSADLALFSQMGSQYELKDSPGVHPGSFAAHTSPAFYPYGQFQYGDPAR
PKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK
VTWGARSKEDEDGNIFGSDNEGDTEKNDDEEEIDLESIDIDKIDDNDGDQSNDDDDDKPE
GRERDREFDSLEKRRPFALQHEAFDKSKNSISSGKELSDSNNNTRVLSRDRQGSFQLPVN
NKPKIWSLAETATSPDSSVKSTSPSGPAGHTPPQMQHPAFLPSHGLYTCQIGKFHNWTNG
AFLGQNSLLNVRSFLGVNQHHHHNHHLHTQQQLQQTSVLVSAGAALNDKASPQLSPKHID
RDNVVRSDSPPTQPLKSSFRPLHDGPRTQQEATQRVLTALSSA
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcccccagttgggctaccctcagtacttaagtgcctcccaagtggtgtacggc
ggggatcggccgggggtcctgactccgtcgtcccggggagggagctctgagatcgcggga
aaccagtcggctgctgccgctgcagtcacctcggtgttgggcatgtacgcaaacccctac
actgcacacaactacagcgcattcttgccttacagcagtgcagacctggctcttttctct
caaatgggctcccagtacgagctgaaggacagtcctggcgtccaccccggcagcttcgcg
gcccacacctcgccagccttctacccatacggtcagttccagtacggggacccggccagg
cccaagaacgccacccgggagagtaccagcacgctgaaggcctggctcaatgagcacagg
aagaacccctaccccaccaagggagagaagatcatgttggccatcattactaagatgacc
ctgacgcaggtgtccacctggttcgccaacgccaggaggaggctgaagaaggagaacaag
gtgacgtggggggccaggagtaaagaggacgaggatggaaacatcttcggctccgacaac
gagggagacacggagaagaacgatgacgaggaggagatagatctagagagcatcgatata
gacaagatagacgacaacgatggagatcagagcaacgacgatgacgatgataaaccggag
ggcagagagcgagaccgagaatttgacagtctggagaaacggcggcccttcgctctgcag
cacgaggccttcgacaaatctaagaactcaatttcctccgggaaggaactttctgatagc
aacaacaacaccagagttctgtcccgggacagacagggaagttttcagctcccagtgaac
aataagcctaagatctggtcgttagctgagacggctaccagtcctgatagttctgtgaag
tccacctctccctccggccctgccggtcacacaccgcctcagatgcagcacccggccttc
ctgccctcccacggactatacacctgtcagataggcaagttccataactggaccaacgga
gcattcctggggcagaactctctgctcaatgtccggtcgtttctaggagttaatcagcac
catcatcataaccaccacttacatacccagcagcagctgcagcagacctcggtgttggtg
tcggctggagcagcgctcaacgacaaggcctcgccacaactcagtcccaagcacatagac
cgtgataacgttgtaagaagtgactctcctccaacacaacctctgaagtcttcatttaga
ccccttcatgatggccccaggactcagcaagaagccacgcagcgggttctaaccgccctc
tcctcggcttga
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