Coregonus clupeaformis (lake whitefish): 121542367
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Entry
121542367 CDS
T08357
Name
(RefSeq) syntaxin-3-like isoform X1
KO
K08486
syntaxin 1B/2/3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
121542367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121542367
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121542367
Membrane trafficking [BR:
cclu04131
]
SNARE
Syntaxin (Qa)
Stx-PM
121542367
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of epithelial cells
121542367
Exosomal proteins of other body fluids (saliva and urine)
121542367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syntaxin
SNARE
Syntaxin_2
FlaC_arch
PI_PP_C
YtxH
Relaxase_C
OEP
IMPa_helical
DUF6827
Fib_alpha
Motif
Other DBs
NCBI-GeneID:
121542367
NCBI-ProteinID:
XP_041707706
LinkDB
All DBs
Position
3:23276568..23304248
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AA seq
289 aa
AA seq
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MKDRLEQLKATCDNDDEEVEIAIDNAAFMDEFFSQIEDIRNSIDKIDENVCEVKKLYSVI
LSAPTSDQKTQDDLEAVTNDIKKMANNARNKLKTIERNLESEEEERISADMRIRKSQHAV
LSRKFVNVMTKYNEAQVDFRERSKGRIQRQLEITGKATTDEELEEMLEGGNSAVFTSGIM
DSGISKQALSEIEARHKDIVRLESSIKELHDMFVDIAMLVESQGDIVNNIEAQVCKAQDH
ITVAKTETKKAIRYQSKARKKIVIIVAVLIIVLAIVALIIGLSVGLKER
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaccgattggaacaactcaaagctacatgcgacaatgacgatgaggaagtggaa
attgctattgacaatgcagcttttatggatgagttcttctctcagatcgaggatatcagg
aacagtattgataagattgatgagaatgtgtgtgaagtcaagaagctctactcagtcatc
ctgtctgcccccacatcagaccagaaaacgcaggatgacttggaggctgtcaccaatgac
atcaagaagatggctaacaacgcccgcaacaaactcaaaaccatcgagaggaatctggag
tctgaggaagaggagaggatttcagctgacatgcggatacgcaaatcacagcatgcagtg
ctgtccaggaagtttgtgaacgtgatgactaagtacaatgaggcccaggtggacttcagg
gagaggagtaaaggacgcatccagagacagctagagatcactggcaaagccacgacagac
gaggagcttgaagagatgttagagggtggaaactcggccgtcttcacttcagggatcatg
gactctgggatctccaagcaggctctcagtgagatcgaggcgcgacacaaagacattgtg
cgtctggagagcagtatcaaagagctgcacgacatgttcgtagacatcgccatgctggtg
gagagccagggtgacattgtaaacaatatagaagctcaagtgtgtaaagcgcaggatcat
ataacagtggctaagactgagaccaaaaaagccatcaggtaccagagcaaagcacgcaag
aaaattgtgataatagtggcagttctgattatcgtgctggccatagtggctctgattatt
gggttgtcggtgggattgaaggagagatga
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