Coregonus clupeaformis (lake whitefish): 121542404
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Entry
121542404 CDS
T08357
Name
(RefSeq) farnesyl pyrophosphate synthase isoform X1
KO
K00787
farnesyl diphosphate synthase [EC:
2.5.1.1
2.5.1.10
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu00900
Terpenoid backbone biosynthesis
cclu01100
Metabolic pathways
Module
cclu_M00367
C10-C20 isoprenoid biosynthesis, non-plant eukaryotes
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
121542404
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
cclu01006
]
121542404
Enzymes [BR:
cclu01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
121542404
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
121542404
Prenyltransferases [BR:
cclu01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
121542404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Pfc11_Rna14-15-ID
DUF7083
Homeodomain
Motif
Other DBs
NCBI-GeneID:
121542404
NCBI-ProteinID:
XP_041707735
LinkDB
All DBs
Position
Unknown
AA seq
359 aa
AA seq
DB search
MGDSSCSNGTHHSGAVQSDPQLFEAQFEELVTELTEQDLTDPVLADALNRLREVLHYNTP
GGKRNRGLSVIGSLRELVPPTELTQDAVRRALLVGWCIELLQAFFLVADDIMDASVTRRG
QPCWYKRERVGLDAINDAFLLEGAIYRLLRRHCRAQLYYVHLLELFTETSFQTELGQALD
LMTAPPGQIDLNRFTMERYKAIVKYKTAFYSFYLPVAAAMYMAGIDSEEEHNNAKHILLE
MGEFFQIQDDYLDCYGDPAVTGKIGTDIQDNKCGWLVVTALGVMTPEQRAELESCYGRHD
SVSVEKVKALYNTLQMSTLYHQYEDDSYQRLQKLIARHAQNLPHVVFLNFAKKIYKRNK
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacagtagttgcagcaacgggacccaccactcaggggcggtacagtcagaccca
cagctgtttgaggcccagtttgaggagctggtgacagagctcacagagcaggacctcaca
gaccctgtccttgctgacgctctcaacagactcagagaggtgttgcactacaacactcct
ggaggaaaaagaaacagaggtctgtctgtgattggctctttgagggagcttgtccctccc
acagagctgacccaggatgctgtgcgacgggccctgctggttggctggtgcattgagctg
ctccaggcattcttcctggtagctgatgacatcatggatgcttcagtgactcggagaggt
cagccctgctggtacaagagggagagagtgggtctggatgccatcaatgatgccttcctc
ctggagggagccatctacagactactgcgcagacactgcagggcacagctctactacgta
cacctattggagctcttcactgagacgtccttccagacagagctgggccaggctctggac
ctgatgaccgctcctcctggtcaaatagacctcaaccgcttcaccatggagagatataag
gccatagtaaagtacaaaactgccttctactccttctacctccctgtggcagcagccatg
tacatggcgggcattgacagtgaagaggaacacaacaacgctaaacacatcttactggag
atgggagagttcttccagatacaggatgactacctggattgctatggcgacccggcggtg
acggggaagattggaacagacatccaggacaacaagtgtggctggctggtggtgactgct
ttaggggtcatgaccccggaacagagggcagagctggagtcatgttatggtcggcatgac
agtgtgagtgtggagaaggtgaaagcgctgtacaacaccctacagatgtccaccctgtac
caccaatacgaagacgacagctaccagcgcttacagaaactcatcgctcggcacgcccaa
aaccttccacatgtagttttcctcaacttcgccaagaaaatctacaagagaaacaagtga
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