Coregonus clupeaformis (lake whitefish): 121542451
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Entry
121542451 CDS
T08357
Name
(RefSeq) sortilin
KO
K12388
sortilin
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
121542451
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Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
BNR_6
DUF4988
Motif
Other DBs
NCBI-GeneID:
121542451
NCBI-ProteinID:
XP_041707783
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Position
11:complement(535483..554634)
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AA seq
821 aa
AA seq
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MTWRLLVLGGACLLLLGVGGQCKEQRNRRTVSFHRIQQFGNHRKVLSRPERDTIASPSPT
FTACTLRLTPLEHRVLDQNTHETGFHGDDGSSFTVTWVGDGTGVILVLSTVSAPLDSFFE
GGSSRLYRSADYGKSFHDVSHLINNTFIRKEFGLLAGPGNSQQVILTADTPVLDNPGGVI
FTSTDAGVSFKSVQLPFHPAQPITFHFLNPEYLVVISIDGGLWLSLDFGAVWTKVHEGTQ
SFTWGSGITLFFSFSPKGTVEADRRGELLLKRTEDLGKTFTTVLHSIFSFGYVGGFLFTS
VIETLGAPRVIYVSSDQGDHFNKAQLPSASTEQFYSVLDGDEDMIFMHVDNPGEESYFGT
VYTSDDRGIVYSKSLERHLFGGEGKSDFTNVTSMRGVYLTNVLEEDGRIRTVISFNRGGE
WKLLNKPQNVECGKDSRNDCNLHIHGEHSQYNGITPMLPLSDPTAVGLVIAHGSVGDSIS
SARPDVYVSNDGGYKWRGALRGAHHYSILDSGGLVVAVEAHPRDGQINTIKFSTDEGQCW
KVYNFTEQPIFFAGLTSEPGTKTMNISVWGYRPEDDDQPMWVVVTIDFQSLITRECGNQD
YVQWLAHATEGGDSATEGCVLGYKEIFRRLRKLSICRNGRDYVVSRRKSPCPCTREDYLC
DYGYYRHENSSECMRQLDTADHALEVCLNGEEEELRTSGYRKVPSDRCEGGFTPLRREET
VNRHCGNSSQPPTASPYSETPREKMVLIVVCVGVGIVILVAVATAVYTVRRMVYGNRAPT
YRFSFLQLQDDDPSIAANPESVTSSNGTSVFQVDSDDELIE
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgacttggagacttttggtcctcggtggggcatgcttgcttcttctgggtgtggggggt
cagtgcaaagagcaacgaaaccggagaacggtgtctttccatcggattcagcaatttggg
aaccaccgtaaagtcctctcacggccagaaagggataccatagcttctccaagtcccact
ttcaccgcttgtacactccgtcttacaccattagaacacagggtgttggatcaaaataca
cacgagacagggtttcatggtgatgatggctccagttttactgtcacatgggttggagac
gggacaggagtaatcttggtgttgtctacagtcagtgctcctctagactccttcttcgag
ggcggttcttcacgactgtaccgcagtgcagactatggcaagtctttccatgatgtttct
catctcatcaacaacaccttcataaggaaggaatttggacttctggctggaccagggaac
tctcagcaggtgattctgactgcagacacaccggtcttggacaaccctggtggcgtcatc
tttacctcgactgacgccggagtgtcctttaagtctgtccagctgccctttcacccggcc
cagccaatcaccttccacttcttgaatcccgaatacttagtggtcatcagcattgatggt
ggcctgtggctttctctggattttggggctgtgtggacaaaggttcacgagggaacacaa
tctttcacatggggctccggcatcactctcttcttcagcttcagtcccaaaggaacagtg
gaggcagacagaagaggagagctgctcctgaagaggacagaggacctggggaagacattc
accaccgtgctacacagcatcttctccttcggctatgtaggaggcttcctcttcacctca
gtcatagagacactgggagccccacgtgttatctatgtgtcctcagaccaaggggaccac
ttcaacaaggcccagcttccctctgcctccaccgagcagttctactcggttctggatggg
gatgaggatatgatcttcatgcatgtggacaatccgggagaggaaagctactttgggacg
gtgtacacgtcagatgaccggggcatcgtgtactctaagtctctggagcgccacctgttt
ggtggggaagggaagagcgacttcaccaatgtcacctccatgagaggagtctacctcacc
aacgtactggaggaggatggccgcattcggacagtcatttcatttaaccgagggggtgag
tggaaactcctcaacaagccccagaatgttgagtgtggcaaggattcaagaaatgattgt
aacctgcacatccacggcgaacacagtcaatacaacggcataactcccatgctgcctctc
tctgatcccaccgccgttggccttgtcatcgcccacggcagtgtgggggactccatctcg
tcagcacggcctgatgtgtacgtgtcgaacgacggggggtacaagtggaggggtgcgctg
aggggggcccatcactacagcatcctggactctggggggctcgtcgtggctgtggaggcc
catcccagggacggccaaatcaacaccatcaagttctccacagatgagggccagtgttgg
aaggtgtacaacttcacagagcagcccatcttcttcgctggcctgacgtccgagccgggc
accaagaccatgaacatcagcgtgtggggttaccggcccgaggacgatgaccagcccatg
tgggtggtggtcaccattgacttccagagtctcatcaccagagagtgtggtaaccaggac
tatgttcagtggttggcccatgccacagagggtggggactcggccacagaagggtgtgtc
ttgggctacaaggagatcttcaggaggctgaggaagctgtccatctgcaggaatggacgg
gactacgtagtgagcaggcgaaaaagcccctgcccctgcaccagagaggactacctatgt
gactatggttactatcgccatgagaacagctcagagtgtatgagacaactggacactgca
gaccacgccctggaggtgtgtctaaacggagaggaggaggagcttaggacatcagggtac
cgtaaggttcccagtgataggtgtgagggaggtttcactcccctgcgtagagaggaaaca
gtcaacaggcattgtgggaactccagtcagccgcccactgccagcccatactctgaaacc
ccgagagagaagatggtgttgatcgtggtttgcgttggagtagggattgtcattctggtg
gctgttgccactgctgtctatactgtaaggagaatggtctatggaaatagggcgccaacg
tatcgcttctctttcctgcagcttcaggatgacgacccctccattgccgccaacccagaa
agcgtcaccagtagcaatggaacatcagtcttccaagtggattcagatgatgaacttatt
gaatga
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