Coregonus clupeaformis (lake whitefish): 121542549
Help
Entry
121542549 CDS
T08357
Name
(RefSeq) caprin-2 isoform X1
KO
K18744
caprin-2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121542549
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
121542549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C1q
Caprin-1_dimer
Caprin-1_C
BclA_C
Motif
Other DBs
NCBI-GeneID:
121542549
NCBI-ProteinID:
XP_041707879
LinkDB
All DBs
Position
28:4371440..4379128
Genome browser
AA seq
968 aa
AA seq
DB search
MPDDSQTTYKKIRNFKYEMTPVGDTKCAHIGEDLNMVQLSPSPARDVSPSPACSEKGRQG
SPKAGSPKMGAPGGLSPLQLALAASTTIYQGYESYIEDGLICLKHKIRNLEKKKIKLEDY
RKRLKHGESLNQDQIDAVEKYDEVIHNLQFAQELHKTLSGLTQDLLKAQKKAVRKEQMAK
LEVERKRLCVVLQVKFLLQTLLQHEHIRKDLLSARNPQLQVAELQSLLELAELLGVKRDK
NVSLEEQMESAALVYLDLLEGKNIPVAGTTYKVLKAKLAKLMDCGYFDCVPPPPSKSPKE
VEVPMTKKTVSQTVSLSALMKSNKKDVPSREFLNRHYLPDTDPNGCRDAPINQNWKAEFQ
AMKEQEPPDSWDMESDSTQPVIQKPWRGAAVLISKVPVTTKKQNGESKQRRAKSKRERDA
TAAPRVDTPVEVFNSQSSLPKDPILRKQQLEDLMTKIRGSFSFMQDSLLDGEGSPTNSHL
RLGSRASGSPSPLVQRDSRRSPVDLLPKTLHSTPLPSKLLPVDDKPSLTNGDSGCLESCD
LDLTTEDLAHVITIDPCLLLSESETACPSPPAPPPLYRRESSITLDEKTSAQTPISESGK
QSPCNGVVPPCTSTPTPTQGQPFSTPPSRRTLTMAPPVPFQTMHSVFKVNAPLLPTGDFK
SDIIPYSTTSTQTPPEFAPPEDEHLQSVNQSECLVGSGGQIFLSPSQSGGTMGRSGQSYY
RGSVRGIARGGKGLAHSYFRSSGGHRGGSFIPQAHLFGARDTGYQHGYRRGGGNAGQRHN
NSGWSDSSQVSSPDREGNYSLVDSAHGDSLHGVGMDLTPHTLMHVPMYPLPQHPQPLRVA
FTAARTANYTPGTLDQPIAFDQLHSNLGEMFNTNVGRFTCPANGTYVFLFHILKLAVNVP
LYVNLMRNDEVMVSAYANDGAPDHETASNHSILQLYQGDQVWLRLHRGSIYGSSWKYSTF
SGFLLYQD
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgcctgatgattcccaaacaacatacaaaaaaatacgcaactttaagtatgagatgact
cccgtcggcgacacaaaatgcgcacacattggcgaggatctgaacatggtgcagctgtct
ccatccccagcccgggatgtctctccttcacctgcgtgctccgagaaggggaggcagggg
agccctaaggcaggtagccccaagatgggcgcccctggtgggctgagtcctctccagctg
gccctggcagcctccaccaccatctaccagggctacgagagttacatcgaggacggcctc
atctgcctcaagcacaagatccgcaacctggagaaaaagaagattaaattggaagactac
aggaagcgtttgaaacatggggagtcactcaatcaagaccagatagatgcagtggagaag
tacgatgaagtgatccacaacctacagtttgcccaggagctgcacaagaccctgagtggc
ctaacacaggacctgctaaaggcccagaagaaggcggtgaggaaggagcagatggccaag
ctggaagtggagaggaagaggctgtgcgtagtactgcaggttaagttcctcctgcagacc
ctgctgcagcacgagcacatcaggaaggacctcctctctgcccgcaacccccagctccag
gttgcagagctacagagcctgcttgagctcgctgaactactgggggtgaagagggacaag
aatgtgagtttggaggagcagatggagagcgcagccctggtctacctggacctgctggag
ggaaaaaatataccagtagccggcaccacctacaaggtcctgaaggctaagttggctaag
ctgatggattgtgggtactttgattgtgtaccaccacctccgagcaagagtcccaaggaa
gtagaggttccgatgaccaagaagacggtgtctcaaacagtcagcctctctgccctgatg
aagtcaaacaaaaaagatgtgcctagcagagagtttcttaacagacactacctgcctgac
acagaccccaatgggtgtcgagacgctcccattaatcagaactggaaggccgagttccag
gccatgaaggaacaggagccaccggactcatgggatatggagtcggactccactcagcct
gtaatccagaaaccatggagaggggcggctgtgttaatctccaaagtgccagttactacc
aagaaacaaaatggcgaatccaaacagagaagagcaaagtctaaaagggagcgggacgcc
acagctgcacctcgtgtggacacccctgtggaggtgttcaactcgcagtcttccttgccc
aaggaccccatcctgcgcaagcagcagctggaggacctgatgaccaagatcagaggctcc
ttcagcttcatgcaggattctcttctggatggagaaggatcacccactaacagccatctt
agattgggcagtcgtgcctctggatccccctctccactcgtacagagagattcaaggaga
agcccagtggaccttctccccaaaacactgcattccactccattgccttctaaactcctc
cctgttgatgacaaacccagtctgaccaatggagacagcggttgtctagagagctgtgac
ctggacctaactacagaggacctggctcacgtaataaccattgatccatgtctgctgctg
tctgagagtgagactgcctgcccctctcctccagctcctcctcccctctaccgtagggag
tcctccatcaccctggacgagaagacctctgctcagactcccatctctgaatctgggaag
cagtccccctgtaacggggtggtgcctccttgtacctcaaccccaacccccacccagggg
cagcccttttctacccctcccagcagacgtacactcaccatggctccccctgttcccttc
cagaccatgcattcggtattcaaggtgaacgcccccttacttccgactggagactttaaa
tccgatataatcccctattccaccaccagcacccagaccccaccggagtttgctcccccg
gaggacgaacacctacagtcagtgaaccagtctgaatgtctggtgggtagtggtgggcag
atcttcctgtcccctagccaatcaggtggcaccatgggccgttctggccaatcatactac
agaggatctgttagaggaattgcacgtggtggcaaggggctggcacactcctactttcgc
tcttctggtgggcacagaggaggaagcttcatcccccaggctcacctgttcggcgctcgg
gacactggctaccagcatggctacaggcgcggtggaggcaatgcaggacaaaggcacaat
aatagtggttggagtgactcctcccaggtgagcagcccagaccgggagggcaactactcc
ctggtagactctgcccacggcgactcgctgcatggtgttggcatggacctcaccccccat
accctgatgcacgtacccatgtacccgctcccccagcatccccagcccctccgcgtggcc
ttcacagcagcccgcacagccaactacaccccgggcaccctggaccagcccatcgccttt
gaccagctccacagcaacctgggggaaatgttcaacaccaatgtgggtcgtttcacctgc
ccagccaatggcacctacgtcttcctcttccacatcctcaagctggcggtcaacgtgcca
ctctatgtcaacctgatgcgcaatgacgaggtgatggtgtctgcgtacgccaacgacggg
gctccggaccacgagacggccagcaaccactccatcctgcagctgtaccagggagaccag
gtgtggctgcggctgcaccgcggctccatctatggcagcagctggaagtacagcacattc
tctggcttcctgctctaccaggattga
DBGET
integrated database retrieval system
