Coregonus clupeaformis (lake whitefish): 121542610
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Entry
121542610 CDS
T08357
Name
(RefSeq) tumor necrosis factor receptor superfamily member 16
KO
K02583
tumor necrosis factor receptor superfamily member 16
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
cclu04010
MAPK signaling pathway
cclu04060
Cytokine-cytokine receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
121542610
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121542610
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
121542610
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04050 Cytokine receptors [BR:
cclu04050
]
121542610
04090 CD molecules [BR:
cclu04090
]
121542610
Cytokine receptors [BR:
cclu04050
]
Tumor necrosis factor receptors
TNF receptor superfamily
121542610
CD molecules [BR:
cclu04090
]
Proteins
121542610
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNFR_c6
Death
TNFR_16_TM
TNFR_ELAPOR1_6th
bDLD3
TPR_21
Ephrin_rec_like
Motif
Other DBs
NCBI-GeneID:
121542610
NCBI-ProteinID:
XP_041707981
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All DBs
Position
17:complement(25807535..25821815)
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AA seq
419 aa
AA seq
DB search
MAAAFVCTLFLLVKVALGDACVSGQFSQSGECCSHCPPGHGVEIECGMEDTKCQPCPEGT
FSPSDGLSPCLPCARCPAGIPELASCSATLDTHCDCDEHFYLWRDGTSVAGLCAACTMCG
RGEGAVRLCGAQGNTQCQPCRLGTFSEEKSNTKPCQACSQCSDTEVEIRACQLNSDTLCM
DKKLHILSRPPESDGPLAAPRLPGLGLVDDDEEGDEASPAPGGRAAPGGPGFTPQDDGSR
NNILVYVSVLAAVVLGLLLYVAYKCWTSYKQKQALSKARAAELGTTPEGEKLHSDSGVFL
DSHSLQDSQPSKGSKRDSKQDSRLYINLPPHRQEEVERLLQEGGEGRGGSWRILGTALGY
EPEQMDLFGRGEAPVHTLLSNWAQQEGSTLGLLCSALARIERPDVAAALTCPGHGVSVV
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggcttttgtctgcacactttttctgctcgtgaaggttgccctgggagatgcc
tgtgtcagtgggcagttcagccagtcaggggagtgctgtagccactgccccccaggccat
ggggtggagatagagtgtgggatggaggacaccaagtgccagccttgccctgagggaacg
ttctccccatcagacggtctctccccgtgcctcccctgtgcccgctgcccggctggcatc
ccagagctggcctcctgcagcgccaccctggatacccactgtgactgtgacgagcacttc
tacctatggcgggatgggacgagcgtggcggggctgtgtgccgcctgcactatgtgcggg
cgaggcgagggggcggtgaggctgtgcggtgcccaggggaacacccagtgccaaccatgc
cgcctgggaacgttctcagaggagaagagtaataccaagccctgccaggcatgctctcaa
tgctctgacaccgaggtggagatcagagcctgccagctcaactctgacaccctctgcatg
gataagaagctccacatcctgtctcgtccccctgagtctgacggccctctggccgctcct
cgcctgcctgggttagggttggtggatgatgacgaggagggggacgaggccagccctgcc
cctggaggaagagcggcccccgggggccccgggttcacccctcaggatgatgggagcagg
aacaacatcctggtctacgtttctgttctggctgccgtggtgctgggcctgctgctctac
gtcgcctacaagtgctggacgtcatataagcagaagcaggcgttgagtaaagcccgtgct
gcagagctggggacgactcctgaaggagagaaactccacagtgacagcggagtgttcctg
gactcacacagcctgcaggatagccaaccaagcaaaggtagtaagagggacagtaagcag
gacagccggctgtacatcaacctgcccccccacagacaggaggaggtggagcgtctgctc
caggaggggggcgagggccgtggaggctcctggaggatcctggggacagcgctgggttac
gagcccgagcagatggacctgtttgggcgcggcgaggcccctgtacacaccctcctctcc
aactgggcccagcaggagggctccaccctgggactgctgtgctcagcgctggcccgcatc
gagaggcccgacgtggccgccgctctcacctgccctggccatggggtgtctgtggtctga
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