Coregonus clupeaformis (lake whitefish): 121542631
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Entry
121542631 CDS
T08357
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121542631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121542631
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121542631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_14
TPR_19
ANAPC3
TPR_MalT
TPR_8
ARM_TT21
TPR_7
Motif
Other DBs
NCBI-GeneID:
121542631
NCBI-ProteinID:
XP_041708006
LinkDB
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Position
2:complement(5532020..5553163)
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AA seq
767 aa
AA seq
DB search
MADNNTDQEKEIAANALEAFTAGNYDESLKHLGKLQELNKEDYKIALNKAIAEFYKSGQT
TTCTLKQTLIAMKNQVHTSMEDIDGLDDVENSLLYYNQAIIHYHMRQYSEAIAIGEKLYQ
FLEPFEEKFALAVCFLLVDLYLLTYQPEKALHLLAVLEKLSVQGNNKNGKGEVIFQAQCK
FYIHRDPVVEAADLIQDNLREITGGQSANSTNKDGRNQKAEFIGMIEAAKSKMHQYKVRA
YIQMKSSKACKREIKSVMNTAGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGAI
KTGECVRCMFWNNLGCIHFAMGKHNLGIFYFKKALQENDHTCAQLGDGGATGNGQSKQFS
GIPMCALLANKRYELLYNCGIQLLHIGRPLAAFECLMEAVQVYHSNPRLWLRLAECCIAA
NKGSLEQENKGLPSKKGIVQAIVGQGYHRKIILASQSSQNTIYSDGQSAAIPVASMEFAA
ICLRNGLVLLPDHQQQETKAENGSKTPSQSGSTESGSENSDACSGKGQEGDKFLSAAPSS
PLRKQEVENLRCSLLACSAYVALALGDNLMALNHAEKLLHQTKLSGSLKFLGHLYAAEAL
ISLDRISEAIAHLNPENVTDVSLGVLSSEQDQGSDKGDLEPVESSGKQTPLCYPSTVSSA
RAIMLFNLGSAYCLRSEYEKARKCLHQAASMVNTKEIPPEAILLAVYLELQNGNTQLALQ
IIKRNQLLPSVLQTPSPDTRKKPVPSSFQPVQPPIQMPSPFTTVQRK
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggcagataacaacacagaccaagaaaaagaaatagctgcaaatgcgttggaggcgttt
acggccggaaactatgatgaatctttgaaacaccttgggaagctgcaagagttgaacaag
gaggactacaagattgctttgaataaagcaatagctgaattctacaagagtggccaaacc
accacatgtaccctgaaacagaccctcattgcaatgaaaaaccaggtgcacacttcaatg
gaggacattgatggtttggatgacgtagagaacagtctgctctactacaatcaagctatc
attcactaccacatgagacagtactccgaagctatcgctattggagagaagctgtaccag
tttctggagccatttgaagagaagtttgctctggcggtctgcttcttgctggtggatctg
tacctgctaacgtaccagccagagaaggccctccatctccttgctgtgctggagaaactg
tctgtacagggaaacaacaagaacggcaaaggggaggtaatatttcaggcacagtgcaag
ttctacattcacagggacccggtagtggaggcagcagacctcattcaggataatctcagg
gagattactggaggacagagtgccaacagcacaaacaaagatggtcggaaccagaaggca
gagttcatcggcatgatcgaagcggcaaaatccaaaatgcaccagtacaaagtgcgagcg
tacattcagatgaagtcatcaaaggcgtgcaaaagggagatcaagtctgtgatgaacaca
gcagggaattctgcgccctcactcttcctcaagagtaactttgagtacctgagaggaaac
taccgcaaagcagtgaagctcttaaacagctccaacatcgcagagcacccaggggccatc
aaaacaggtgaatgtgtgcgctgtatgttctggaacaatctgggttgcatacactttgcc
atggggaaacacaacctaggtatcttctacttcaaaaaggccctgcaggagaacgaccac
acgtgtgcacagctgggtgacggtggggcaacgggtaacgggcaatctaagcagttctcg
ggcatccccatgtgcgcgctgctagccaacaagcgttatgagctgctgtataactgtggg
atccagctgctgcacatcggccggcccctggcggccttcgagtgtctgatggaggctgtg
caggtgtaccactctaaccctcgcctctggttacggctggctgagtgctgcatcgctgcc
aacaagggcagcttagaacaggagaacaagggtcttcccagtaaaaagggtatcgttcag
gccatcgttgggcaaggctaccatcgcaagatcatcctggcgtcgcagtcctcccagaac
acaatctacagtgatgggcagtctgcagccattccggtggccagtatggagtttgcagcc
atctgtctgaggaacggtctggtcctcctccctgatcaccagcagcaggagaccaaggca
gagaacggctccaagacacccagccagtcaggcagcacagagagcggctcagagaacagc
gacgcctgcagtgggaagggtcaagaaggggacaagttcctttctgcagcaccatcttca
cctctgaggaaacaggaggttgaaaacctcaggtgttccctcctggcctgcagtgcctac
gtggccctggcgttaggagacaacctgatggccctgaaccatgcagagaagctccttcac
cagaccaagctgtctggatcactcaagttcctgggccacctgtatgctgcagaggccctc
atatccctagaccggatctcagaggccatcgctcacctcaacccagagaacgtcactgat
gtctccctgggggtgttgtccagcgagcaggaccaagggtcagataaaggggatctggag
cctgtcgagtcatcagggaagcagactcctctgtgttaccccagcacagtgagctcagcc
cgggccataatgctcttcaacctgggcagtgcctactgtctgaggagtgagtatgagaag
gcccgcaagtgcctgcatcaggcggcctccatggtgaacacgaaggagattcctcctgaa
gccatcttactggctgtctacctcgagctgcagaacgggaacacacagctcgccctacaa
atcatcaaacgtaaccagctcctcccctcagtgctccagacgccctctccagacacacga
aagaagcctgttccctcctccttccagcctgtccaaccacccatccagatgccctcaccc
ttcacaacagtccagcgcaaatga
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