Coregonus clupeaformis (lake whitefish): 121542653
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Entry
121542653 CDS
T08357
Name
(RefSeq) DENN domain-containing protein 3 isoform X1
KO
K20162
DENN domain-containing protein 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121542653
Membrane trafficking [BR:
cclu04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
121542653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
WDR55
Beta-prop_EML_2
WD40
dDENN
Beta-prop_WDR75_1st
WD40_2
uDENN
Beta-prop_EML
Beta-prop_LRRK2
DUF5074
EIF3I
Avl9
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
SPA
Sec7-like_HUS
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
121542653
NCBI-ProteinID:
XP_041708063
LinkDB
All DBs
Position
28:12904365..12924996
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AA seq
1294 aa
AA seq
DB search
MADHLPSGLLEACVVVGASGDKLKDVYQSLQQGNRTTDIPFLDPEVLQVHVPPFVTKENA
DESGGPKTFSRVQCRRSFIKKKERPVVAPSGTGGAGSSEGATITEDVSVPKDIDLMALPQ
LCFPGGLQVTNEPKEERFHFLVFTDVFGNQTHGVVVQCYRPFQEGSMFYQNGHWSSTKTT
KHYIAYAICVISKHPYYNALKDCLSCLLVQLRTCRLSEERVKEFAAKLALVPIPPPGQLH
VVFNLRPLMIVLPSREDKDHPVVDLDLHLPFLCFRSKQILQIITGILMEQRVVFFSADWA
RLTLVAECFMVYIHPLHWQHPYVPILSGQMLDFVMAPTAFLMGCHLNHFEEVAAETDDLI
LINIDDGTVSSSCSETVDLPDVPFASAECFTKRRKGLQLQYDLEVCHQGAGADINEMRML
RRKWQQNLNWEIQKVTLEIIVNMFRDVSGHLNYEHRVFNSEEFLKTRELADQPFYKKVLE
THIFHSFLKDRLNRKMDAFTRMEVNTRSETQKMKAMIDIPRRPTMQEMARKYSSGPENHL
NKRLGMSLPNLGEERLLRHTSLKKIIIPESAMKIPPKPVKIFELPEFPPPMVHHYVQKYY
GELIILLGKAIFCVPPENSTLLARYFYLRGFMNTLCSKRLDALSDFQNLYKTDIEIFPTV
LVKTLVDSLQKDERSQADQRPELKRLIFKVKTDNEMVLVQADDHVKKFQLPKTHMLQEDF
VKRIQESGIVKDVATIHRLFEALTVGSCKSDLGLDSAMRSPSKSVFYIDSSLDGQQKQID
PEVFRVFYTFWKETEVEAQDVHLPAEVIEHLDNNECVYKLSCSVKTNQGVGKIAMTQKRL
FLLTDGRPGFIEITKFRDIEEVKISFAPFLLLRIPSLKIKCSLRKEVFEANLKSECDLWN
LMVKEMWAGRRMADDHKDPQYMQQALTNVLLMDAVVGCLQTQKAIFAASKLAYFDRVKHE
VPMMVPKTTSEMLKHKINPSLDLPAPQTVQVLLYTPGQLSYSEADGDGNPKLWCALSGGR
VVVFDAASWSMQQNCIQVGSSQLNCMLGLDQGQVWIGSQDSIIYIIDTRSMSCNKQLTEH
RHEVMDFALEESDKMSQTYSCSADGTVILWDLSTLKVKKQFQLTCDRLMSIQLFNGTLWC
CARDGIIELRKNGSPLRKMTLPEDLRSMPTEFSSLILFLERGQLWTSCSDSDELCLWHFK
DLTKPFLRVQLQNCTGVNRMIKVKNQIWVGCRGPSPDQCRVSGKIYIVDTESHSVEKELM
AHTDSVQALCSAEDRYVLSGSACQDGKIAIWKVE
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccatcttccctcagggttactggaagcatgtgttgtcgtcggagcctctggg
gataaactcaaggatgtctaccagtctttacagcagggcaacaggacaacagacatccct
tttttagacccagaggtcttgcaagtccacgtgcctccgtttgtgaccaaagagaatgct
gatgagtctggtggccccaaaactttcagtcgagtccagtgcagacggtcctttatcaag
aagaaggagaggccagtggtggctcctagtggcactggaggggcagggagcagtgagggg
gccactataacggaggatgtcagcgtccccaaggacatcgacctcatggccctgccccaa
ctctgctttccaggggggcttcaagtaacaaatgaaccaaaagaagagcgctttcacttt
ctagtcttcacggatgtgttcggtaaccaaacccatggagtggttgttcagtgttataga
ccatttcaggaagggtcaatgttctatcagaatggacactggtcatccaccaagaccact
aagcactacattgcttatgccatctgtgtcatatccaagcatccttactacaatgctctc
aaggactgtctgtcttgtttgctggtacagcttagaacatgcaggttgtctgaagagagg
gtgaaggaatttgcagccaaactggctctggtgcccattccaccccctggacaactacat
gtggtgttcaacctgagacccctgatgatcgtactaccttccagagaggataaagatcac
cccgttgtagacctggacctccatctgcccttcctgtgctttaggtccaaacagatttta
cagatcatcactggtattctgatggagcagagggtagtgttcttctcagctgactgggcc
cgcctcaccctggtggcagagtgtttcatggtctacatccaccccctccactggcagcac
ccctacgtgcccatcctctcaggccagatgctggacttcgtcatggcccccaccgccttc
ctcatgggctgccacctcaaccactttgaggaggtcgctgcggaaacagacgacctgatc
ttgattaatatcgatgatggaacagtgtcttcctcctgctcagagactgtcgacctacca
gatgtccccttcgcttcagcagagtgttttacgaagcggaggaaaggcctccagctacaa
tatgatctggaggtgtgtcaccaaggggccggcgcagacattaacgagatgcgcatgctg
agaagaaaatggcagcagaacctgaactgggaaatacagaaggttaccttggagataatt
gtcaacatgttcagggatgtcagtggtcacctgaactatgaacacagagtgtttaacagt
gaagagttcctgaagaccagagagctagctgaccaacccttttataaaaaggtcttggag
acacacatctttcattcattcctgaaggaccgcctcaataggaagatggatgctttcaca
cgcatggaagtcaacactcgctcagagacacagaaaatgaaggcgatgatagacatcccc
aggaggcccaccatgcaggagatggccaggaagtatagcagtggcccagagaaccatctg
aacaagaggctggggatgagcctccccaacctgggagaggagcgcctcctcagacatacc
tccctcaagaagatcatcatccctgagagtgccatgaagatcccgcccaagcctgtgaag
atcttcgagctgccagagtttcctcctcccatggtgcaccactatgtccagaaatactac
ggagagctgatcatactactggggaaggccatcttctgtgttcctcctgagaactccact
ctcctggccaggtacttttacctgcgcggcttcatgaacacgctgtgttccaagcgtctt
gacgccctcagcgacttccagaacctctacaagacggacatcgagatcttccccaccgtc
ctggtgaagacgctagtggactcgctgcagaaggacgagcgctcccaggcagaccagcgg
ccagagctcaagcggctcatcttcaaggtgaagacagacaacgagatggtgctggtccaa
gctgacgaccacgtgaagaagtttcagctccctaaaacccacatgctgcaggaggacttt
gtgaagcgcatccaggaatctgggattgtgaaagacgtcgccaccatccataggttgttt
gaggctctcactgtgggatcttgtaagagtgacttgggtttggattcagccatgaggagt
ccctccaaatcagtattttacattgactcctcattggatgggcaacagaagcagattgac
ccagaggtgttccgtgtgttctacaccttctggaaggagacggaggtggaggcccaggac
gttcacctgccagctgaggtcatagagcacctggacaacaacgagtgtgtctacaagctg
tcctgctccgtcaaaaccaaccagggagtgggcaagatcgccatgacacagaagaggctc
ttcctgctcactgacgggaggcctgggtttatcgagatcaccaagttcagagacatagag
gaggtgaaaatctcctttgctccgttcctgctgctgaggatcccgtctctgaagatcaag
tgcagtctgaggaaggaggtgtttgaggccaacctgaagtctgagtgtgacctgtggaac
ctcatggtcaaagagatgtgggctgggaggaggatggcagacgaccacaaggatcctcag
tacatgcagcaggctttgactaacgtcctgctcatggatgctgtggttgggtgccttcag
acccagaaggccatatttgccgcctccaaactggcatactttgacagagtgaaacatgaa
gttcctatgatggttccgaagacgacatcggagatgttgaaacacaagatcaatccatcg
cttgacctcccagctccccagactgtacaggtcttactctacacaccaggccagttgagt
tactcggaggcagacggagatgggaaccccaagctgtggtgtgccctcagtggtgggagg
gtggtcgtgtttgatgcagccagctggtccatgcagcagaactgtattcaagtgggatcc
tcccaactgaactgcatgctgggattggaccagggtcaagtatggattggctcccaggat
tccatcatttacataattgacactcgcagcatgtcctgcaataagcagctgacagagcac
aggcatgaggttatggactttgccctggaggagagtgacaagatgagtcagacatactcc
tgtagtgccgatggaacagtcattctgtgggacctctcaacgctaaaagtgaaaaagcag
tttcaactgacctgtgataggcttatgtccattcagctcttcaatggaacactgtggtgc
tgtgccagagacggcatcattgaactgaggaagaacggatccccacttcgtaagatgaca
cttcctgaggatctacggagcatgcccactgagttcagcagcctcatcctcttcttagag
aggggccagttgtggacgagctgttctgattctgacgagctctgtctctggcactttaaa
gacctgaccaagcctttcctgagggtacagctacagaactgtacaggggtcaaccgtatg
atcaaggttaagaatcagatctgggttggctgcagagggccgagcccggaccagtgcagg
gtgagtgggaagatctacatagtggacacagagagccacagtgtggagaaggagctgatg
gcccacacagacagtgtccaggcactgtgctctgccgaggaccgctatgtactcagcggc
tccgcctgccaggatggcaaaatcgccatttggaaggtcgagtag
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