Coregonus clupeaformis (lake whitefish): 121542708
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Entry
121542708 CDS
T08357
Name
(RefSeq) neuronal acetylcholine receptor subunit beta-2
KO
K04813
nicotinic acetylcholine receptor beta-2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04080
Neuroactive ligand-receptor interaction
cclu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121542708
04082 Neuroactive ligand signaling
121542708
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121542708
Ion channels [BR:
cclu04040
]
Ligand-gated channels
Acetylcholine (nicotinic)
121542708
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GFIT
Motif
Pfam:
Neur_chan_memb
Neur_chan_LBD
DUF2417
Motif
Other DBs
NCBI-GeneID:
121542708
NCBI-ProteinID:
XP_045064456
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Position
28:complement(6146913..6192074)
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AA seq
535 aa
AA seq
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MGAWTLLLCLLAIVRGSLGADTEERLVEHLLNPAHYNKLIRPATNGSELVTVQLMVSLAQ
LISVHEREQVMTTNVWLTQEWQDYRLTWVPEEFDGMEKVRLPSKHIWLPDVVLYNNADGM
YEVSFYSNAVVSHDGSIFWLPPAIYKSACKIEVKHFPFDQQNCTMRFRSWTYDRTEIDLI
LRSDVASMDDFTPSGEWDIIALPGRRNENPADPTYVDITYDFIIRRKPLFYTINLIIPCV
LITSLAILVFYLPSDCGEKMTLCISVLLALTVFLLLISKIVPPTSLDVPLVGKYLMFTMV
LVTFSIVTSVCVLNVHHRSPTTHTMPPWVKLVFLNKLPALLFMRQPRNSCERQKLRQQRR
VQEQKERGRDGGSAGGLMVGLGLGGEGGGTDNNDPCTCYVNRASVKQFVGELGGGAGGGG
SMEGLNGLREGREGGQGNRPRGNQGGGGPALTQAVLGQACPGFEEAVDGVRFIANHMKSE
DDDQSVSEDWKYVAMVIDRLFLWIFIIVCVSGTVGMFLQPLFQNYTAKTITNTNG
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcttggacgctgctgctgtgtctcctcgccattgtgagaggcagcctgggggca
gatactgaggagcggttggtggagcacctgttaaaccccgcccactataacaaactgatc
cgcccagcgaccaatggctcggagctggtgacggttcagctgatggtgtcactggcccag
ctcatcagcgtgcatgagagagagcaggtcatgaccaccaacgtatggctcacacaggag
tggcaggactaccgtctgacgtgggtccctgaggagtttgatggcatggagaaggtcaga
ctgccttccaaacacatctggctgcccgacgttgtgctgtataacaatgctgatggtatg
tacgaggtgtccttctactctaacgcggtggtctcccatgacggcagtatcttctggctg
cctccagccatctacaagtcagcctgtaagatcgaggtcaaacacttccccttcgaccag
cagaactgcaccatgaggttccgctcctggacctacgaccgcacagagatcgacctgatc
ctgaggtccgacgtggccagcatggatgacttcacgcccagcggagagtgggacatcatc
gccctgccggggcgtcgcaacgagaaccctgccgaccccacctacgtagacattacctat
gacttcatcatccgcaggaaacctctgttctacaccatcaacctcatcatcccctgtgtc
ctcatcacctctctggctatcttagtgttctatctgccctctgactgtggagagaagatg
actctgtgtatctctgtcctgctggccctcactgtgttcctcctgctgatctctaagatc
gtccctcccacctccctggacgttcctctggtcgggaagtacctgatgttcaccatggtc
ctggtgactttctctattgtcaccagtgtgtgtgttctcaacgtgcaccaccgctcccct
accacacacaccatgcccccctgggtcaagctggtgttcctcaacaaactgcctgcgctg
ctcttcatgcgccagccccggaacagctgcgagcgccagaagctgcggcagcaacggagg
gtccaggagcagaaggagaggggcagggatgggggctccgccggggggctgatggtgggc
ctggggctggggggcgaagggggtggcacggataacaacgacccctgtacgtgctacgtg
aaccgggcgtccgtgaaacagtttgtaggggagctgggagggggcgcagggggagggggg
tcgatggaggggctgaatgggctgagggagggcagggagggggggcaggggaaccggcct
cgggggaatcagggaggagggggcccagccctgacccaggccgtgctaggacaggcctgc
cctgggttcgaggaggctgtcgacggggtccgcttcatcgccaaccacatgaagagtgaa
gatgacgaccagagcgtgagcgaggactggaagtatgttgcgatggtgattgaccgactg
ttcctgtggatctttataatcgtgtgtgtgtccggaacggtcgggatgttcctgcagcca
ctgttccagaactacactgccaagaccatcaccaacaccaacggctga
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