Coregonus clupeaformis (lake whitefish): 121542711
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Entry
121542711 CDS
T08357
Name
(RefSeq) toll-like receptor 12
KO
K18807
toll-like receptor 12
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cclu04054
]
121542711
Pattern recognition receptors [BR:
cclu04054
]
Membrane-bound pattern recognition receptors
Toll-like receptors
121542711
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
TIR
LRR_4
TIR_2
LRR_9
DHU1_N
Motif
Other DBs
NCBI-GeneID:
121542711
NCBI-ProteinID:
XP_041708147
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Position
28:6109569..6118964
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AA seq
982 aa
AA seq
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MTFVFWVWRPGVSVSVLLLLCVCDRVEGVIRRHCDCYEEDMYVQKDIGGVLDCSFKPGLG
PYAECTEITDLRSGLEEVFPDVRSLCIFHSASSLPADSFSHIPLLEHLWVDGSHLAKVTS
GAFAGLPKLRFLYLLFSSTWGGVNVTLDPGVFQGLSSLEELTLAGMSLALAPPALLDPLV
GVRRLRVDRAGVRDLGELFCLLSPGMEKLETLDLPNSKVSSIQNGGCSGSNPWPTALLSR
IRILDLSGNPVRRVEPKSLAVFQNLSSLSLSMVDVWVGQLWGSGMGRVNKLYLSSYNPRQ
FTPSLSDLCTLVVKHGVESLALHMALITAFTAEVMKRCGLGLRQLSVSSEDLSGMELGFW
TGTGQLQGLMMVLTKLTNASFCSAGGGRVWNLTSLILHDNHLTEITTDQFSCMPLLERLD
LSRNHISLLAHRALQGMPLLRVLDLTHNKISLLGEDDFEGLPALEVLLLEGNKISGGIAH
GVFRRQHRLQDLSLGEIDIIYELFLNMLFLGFPTKLQHLLIDTGPGTYLTVGHVPAPEVP
MVLELRGKMIQSSDCVNNMFPMVRELKVGEGTTFACTSLFLAPYFLNLESFEFSANPEKF
GTPYTTINQLRKLKRLKLTNLNFSNHTDPSVTFRNLTELRSLVLINCRLNFLTRSMFTDL
VSLRVLRLYSESPLILLEGVFLPLLSLSTLVFDQVDFRCDCSNGWLLDWADNSRKTQVVL
LQRQQCIWHYQRLNFLSTMDRLCQTEEDFLSYVSTMTAVCTLLFLALGYRFLRWPCVILF
FRLRGWVERRVGRRWWRKRRMGRGQWEELIEGEEGEEEQEEEEVRYDAFVSFSSRDEAWV
LGEMAPMLEEEGEPRLRLCLHHRDFEVGKGIVDNIAESIYSSRRTVCVLTRRYLRSDWCG
LEMRVATHRLLSEHSHRLILIFLEHISPFELSAFHRLAKLARTRTYLDWPQDEDERVTFW
ERLRRNIAERDTDELHDPPEAS
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgacgtttgtgttttgggtgtggaggcccggtgtcagtgtgagtgtgctgctgctcctg
tgtgtgtgtgacagagtggagggggtgatcaggcgtcactgtgactgctatgaggaggat
atgtatgtacagaaagatatcggaggggtcctagactgttcctttaagcctggcctggga
ccctacgctgagtgcacagagatcactgacctcaggtctgggctggaggaggtgtttcct
gatgtgcgttctctttgtatctttcactccgcctcctccctgcctgcagactccttctct
cacattcccctcctggagcacctctgggtggatggctcacacctggctaaggtgacctca
ggggccttcgctggtctgcccaaactaaggttcctatacctcctcttctcctccacctgg
ggcggagtgaacgtcactctggatccaggggtgttccagggcctgtctagcctggaggag
ctcaccctggctgggatgagtctggccctggccccccctgctctgctggatcccctggta
ggggtgaggaggctgagggtggaccgggctggagtgagagacctgggggaactgttctgt
ctcctctcccctgggatggagaaactagagaccctggatctgcccaacagcaaggtcagc
tccatccagaacggaggctgctctggatccaatccgtggcccacggcgctcctgtccagg
atccggatcctggatctgagtggaaacccggtgcggagggtagagccgaagtctctggct
gtgttccagaacctgtccagtctgtccctgtctatggtggatgtctgggtgggccagctg
tgggggtctggcatggggagggttaacaagctctacctgtccagttacaacccgagacag
ttcacccccagcctgtctgacctgtgtacgctggtggtaaaacatggagtggaatcattg
gctctgcacatggccctgatcacagccttcactgcagaggtcatgaagaggtgtggtctt
ggtctgaggcagctgtctgtgagttctgaggatctgtctggtatggagctagggttctgg
actggtaccggtcagttacagggtctgatgatggtcctgaccaagctgaccaacgcctcg
ttctgctctgcagggggagggagggtgtggaacctcacctctctcattctccatgacaac
cacctcactgagatcaccactgatcagttctcctgcatgcccctgctggagcgcttggat
ctgagtaggaaccatatctccttgctggcccaccgggctctccagggtatgccgctcctc
cgcgtcctcgacctcacccacaacaaaatctccctgctaggagaagatgactttgagggc
ctgcctgctctagaggtgctcctcctggaagggaacaagatctcggggggcatcgctcat
ggggtgttccgtagacagcatcgactccaagacctcagcctgggagagatagacattatc
tacgagctcttcctcaacatgctgttcctgggcttccccaccaagctccagcacctcctc
atcgacacaggcccaggaacctacctcaccgtgggccatgttcccgctcctgaggtcccc
atggtcctggaactcagagggaagatgatccagtcctctgactgtgtcaacaacatgttc
cccatggtccgagagctgaaggtgggtgaggggacaacgtttgcctgcaccagccttttc
ctggccccctacttcctcaatctcgagtcgtttgagttctcagccaaccctgagaagttt
ggcaccccctacaccaccatcaaccagctacgaaaactgaagaggctcaaactgaccaac
ctcaacttctccaaccacacagaccccagtgtcaccttcaggaacctgactgagctcagg
agcctagtgctgatcaactgtcgactcaacttcctcaccaggtccatgtttacagacttg
gtgtctctacgtgtgttgaggctgtacagtgagagtcctctgatcctgttggagggggtc
ttcctccccctgctgtctctctccacgctggtctttgaccaggtcgacttccgctgtgac
tgctccaacggctggctgctggactgggccgacaactctcgtaaaacacaggtggtgctc
ctgcagcggcagcagtgcatctggcactaccaacgactcaacttcctgtccaccatggac
cgcctctgccagaccgaagaggacttcctgtcctacgtctccacaatgactgctgtgtgc
accctcctgttcttggcgctaggataccgctttctccgctggccctgtgtcattctattc
tttcgtctgagaggatgggtggagcggcgtgtggggaggaggtggtggaggaagaggagg
atggggagggggcagtgggaggagctgatagagggggaggagggagaggaggagcaggag
gaagaggaggtgaggtatgatgcgtttgtgtcattcagcagtcgtgacgaggcgtgggta
ctgggagagatggcccccatgttagaggaagagggggagccacgactacgactgtgtctg
caccaccgagactttgaggtagggaaaggcatcgtggataacatcgctgagagcatctac
agcagcaggaggacggtgtgtgtgttgaccagacgctacctgaggagtgactggtgtggc
ctggagatgagagtggctacacaccgcctgttgtctgagcacagccacagactcatcctc
atcttcctagaacacatctcccccttcgagctgtccgcctttcacaggctggctaagctg
gccagaacccggacctacctggactggccccaggatgaggacgagagggtaacgttctgg
gagcgtttacgacgaaacatcgcagagagagacacagacgaactgcatgatcctccggaa
gcatcctga
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