Coregonus clupeaformis (lake whitefish): 121542741
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Entry
121542741 CDS
T08357
Name
(RefSeq) beta-1-syntrophin isoform X1
KO
K24064
beta-syntrophin
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121542741
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Syntrophin_4th
PH_17
PDZ
PH
PDZ_2
PDZ_6
Motif
Other DBs
NCBI-GeneID:
121542741
NCBI-ProteinID:
XP_045069802
LinkDB
All DBs
Position
Unknown
AA seq
530 aa
AA seq
DB search
MAVATVISGNRVQKSGFLEVLVRDRWHKVLANLNEEALTLSCEDLGENENLNGITNGSYG
SNATHPDHKNSPKTAVRTAFTDLQEQVPEAIANRKRCVKVIKQEAGGLGISIKGGKENKM
PILISKIFKGLAADQTQALYVGDAILSVNGVNLRDATHDEAVQGLKRAGREVTLEVKYMR
EATPYVKKGSPVSEIGWETPPPESPRLGSPHSDVPLTPTMSLQGDRRYIPLKMCYITRSM
TAPDPDNRQLELHSPDAKHTVVLRCKDTASAQAWFEVMQSATSNLINKVITEVKEHTGRT
GIAGSREIRHLGWLAEKTENEKQQWKPVLVMVTEKDLLLYDSLPRMKASWHSPAHTYPLL
ATRLVRSGPDRGSPQPGVELSFATRTGTRLGIEAHLFRVETCKDLSLWTRHIVTGCHSSA
QMIKEVTTSCMYQGQECRLVIHYEHGFSVLAEQQGEDQVDQGNQNQAKPLLCYPFERLKM
SSDDGVRVLFLDFSGKEGEIQLDLHSCPKPIVFILHSFLSAKIARLGLVA
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagctacagtaatttcggggaacagagtacaaaaaagtggatttttggaggtt
ttggtgagggaccgatggcacaaagttttggccaacttgaacgaagaagccctaacgctg
agttgcgaggatctgggagagaatgagaacctaaacggcatcaccaatggatcttacggg
agcaacgcaactcacccggatcacaagaacagtccgaaaactgcggtgaggacagctttc
acggatttacaggagcaagtgccagaggcgatcgctaacagaaaaagatgcgtgaaagta
ataaagcaagaggcagggggactcggcatcagcattaaaggaggaaaagagaataaaatg
ccgatacttattagtaaaatcttcaaaggtctggctgcggatcaaacccaagccttgtat
gtcggggacgcgattctgtctgttaacggtgtgaacctgcgagacgctacgcatgacgag
gcggtgcaggggctgaaacgagccgggagagaggtgacgctagaagtgaagtacatgcgg
gaagccaccccctatgtgaagaagggttctccggtgtcagagataggctgggagacgcca
ccaccggagtccccgaggctgggcagcccccactctgacgtccccctcacccccaccatg
tccctacagggggacaggaggtacatccccttaaagatgtgttacatcaccaggagcatg
actgctccagaccctgataacaggcagttggagctgcactctcccgatgccaagcatacg
gtggtgttacggtgtaaagacacagcctcggcccaggcctggttcgaggtcatgcagtcg
gcgacctctaacctcatcaacaaggtcatcacagaggtcaaagagcacacaggaagaaca
gggatcgcagggagcagagagatcagacacctgggctggctggctgagaagacagagaat
gagaagcagcagtggaagccagtgctggtgatggtgacagagaaagacctgctcctctat
gacagtcttccacggatgaaggcatcctggcacagccctgcacacacatacccactgtta
gctacacggctggtgcgctctggtcccgaccgaggctctccccagccgggcgtggagctg
tccttcgccacgcgtacaggcaccagactgggcattgaggcccacctgttcagagttgag
acctgtaaggacctttcactgtggaccaggcacatcgttacgggctgtcactcctctgcc
cagatgatcaaagaagtcaccaccagctgtatgtaccagggccaggagtgcaggctggtg
atccactatgagcatggcttctctgtcctggctgagcagcagggggaggaccaggtggac
cagggaaaccagaaccaagccaaacctctgctctgctaccccttcgaacgcctcaagatg
tcctctgacgacggggtcagggtgctcttcctggatttcagtggaaaagagggtgaaatt
cagctggacctccactcgtgcccaaagcctatcgtcttcattctccactcattcctctcg
gcaaagatcgccagacttggcctggtagcatag
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