Coregonus clupeaformis (lake whitefish): 121542890
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Entry
121542890 CDS
T08357
Name
(RefSeq) POU domain, class 2, transcription factor 2 isoform X1
KO
K09364
POU domain transcription factor, class 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121542890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121542890
03021 Transcription machinery [BR:
cclu03021
]
121542890
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
121542890
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
Octamer transcription factors
121542890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pou
Homeodomain
HTH_31
Cdh1_DBD_1
Motif
Other DBs
NCBI-GeneID:
121542890
NCBI-ProteinID:
XP_045064571
LinkDB
All DBs
Position
28:complement(16007656..16043988)
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AA seq
746 aa
AA seq
DB search
MFVPLPVPFMFQRTAPDLNAWRLKSPLALRSDSDIRMSKPVAVENTGADSPMESTDSERN
GPDSNHQVQQMKISPFPLSPTLSSNKNKMEECGEMSPGPPPHHSHAPSQTPLPHTQLMLT
GSQLAGLTALLPAQQQLLLQQAQAQLLAAAVQQSVQQSNAAHAAHAAHAAAQANQQAQAA
AAANQQAQQQQAGQTGQQGQSQPQGQGQSTQEQTGQPVPVPPIHPQLTLSQPIQLTAQDI
QQLLQLQQLVLVPGHHLQSPQFLLPQHQGQQGLLSTPNLIQLPQQNNGSILSTPTRLGLL
AQRDKAMEGSGVMTSVSSVTSHPEEPSDLEELEVFARTFKQRRIKLGFTQGDVGMAMGKL
YGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAETMSTDSTMPSPSSLSSSSMGFE
GLPGRRRKKRTSIETNVRVALERAFITQNQKPTSEEILCIADQLSMEKEVIRVWFCNRRQ
KEKRINPNSATPPLPGQPPQAPPSHKPPCYSPHMMSSQLSSQLSSQLSQAVTSLSTTMTT
MSSFCPLTPSGPTHSSLSSASSPVTPPPCSTASPAPHSHSTLSLNTGLWRMGKKNGDVSN
YITDFAANLRNTVMGVNTGNQALNQALLSNNPLATIQALAASGGQLPLSSLEGGSKVLLG
GAGGQGGGLQSSFFLNHPAFLHMGQNPGAGLVSAALAKASQPSPFPFTSSISPTPCSPSP
CSSPASSCDSDELAHSPSSLGGAKIE
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcccttgccggtgccgttcatgtttcagagaactgcccctgacctcaacgcc
tggcgtctcaagtccccgttggctctacgttccgactccgatatcaggatgtcaaagcca
gtagcggttgagaacacaggggctgactctccaatggagagcacagattcagagcggaac
ggtcctgactcgaatcatcaggttcagcagatgaaaatcagtccctttcccctttctcca
accctcagcagcaacaagaataagatggaagagtgtggtgagatgtccccgggccctcct
ccacaccacagccacgccccctcccagacgcccctcccacacacacagctcatgctgacc
ggctcccaactggccgggttgaccgctctcttgccagctcagcagcagttgttactgcag
caggctcaggctcagcttctagctgcagctgtgcagcagtctgttcagcagtccaacgca
gctcacgcagctcacgcagcccacgcagccgcccaagccaatcagcaagctcaggcagcc
gcagcagccaatcagcaggcccagcagcagcaggcgggacagacagggcagcagggccaa
tcacagccccagggacagggacagagcacacaggaacagacaggtcaacctgtccctgtg
ccgcccattcatccccagctcaccctctctcagccaatccagctcaccgcccaggacatc
cagcagttgttgcagctgcagcagttggttctggtgccaggacatcacctgcagtctcct
cagttcctcctcccacagcaccaagggcagcaaggactgctatcaacaccaaatctgatt
cagctacctcagcaaaacaatgggagcatcctgtccactcccaccaggctggggctccta
gcacagagagacaaggcaatggagggcagtggggtcatgacctctgtgtcctctgtgacc
tctcaccccgaggagcccagtgacctggaggaactggaggtgttcgcccgcaccttcaaa
cagagacgcatcaaactgggctttacacagggtgacgtgggtatggccatggggaagcta
tatgggaatgatttcagtcagaccaccatctctcgcttcgaggccctcaacctgagcttt
aagaacatgtgcaaactcaaaccactactggagaagtggctcaatgatgcagagaccatg
tccacagacagtactatgcccagccccagctctctgtcctcttcctctatgggctttgag
ggcctgccgggccgacgcaggaagaagagaaccagcatcgagactaacgtccgcgtggcc
ctggagagagccttcatcacgcagaaccagaagcctacctcagaggagatcctgtgtatc
gcggaccagctcagcatggagaaggaggtgatccgcgtgtggttctgcaaccgccgccag
aaagagaagcgtatcaaccccaacagtgccacccctcccctgcctggccagcccccccaa
gccccaccgtcacacaaacccccctgctacagcccacacatgatgtccagtcagctgtcc
agtcagctgtccagtcagctgtcccaggcggtgaccagcctcagcaccacaatgaccacc
atgtcatcgttctgccctctgacccccagtggtcccacccactcatctctcagctctgcc
tcctctccagtgactcctcctccttgcagcacagccagcccagcccctcacagccacagc
acactgagtctcaacacaggcttatggcgtatgggtaaaaagaacggtgacgtgtctaac
tacatcaccgattttgctgcaaacttgaggaacactgtgatgggagtaaacacagggaac
caggctctgaaccaagctctcctcagcaacaaccctctggctactatacaagccctagca
gccagtggtggccagctgcccctttccagtcttgaggggggcagtaaggtgttgctgggg
ggtgcaggggggcagggagggggtctccagtcctccttcttcctcaaccaccccgctttc
ctccacatgggccagaatcctggtgctggattggtcagtgctgccttagccaaagcctcc
cagccctcccccttccccttcaccagcagcataagccccaccccctgctccccctctcct
tgctccagccccgcctcttcctgcgactccgatgaattggcgcacagcccatcctcgctg
ggaggggctaagattgagtga
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