Coregonus clupeaformis (lake whitefish): 121542899
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Entry
121542899 CDS
T08357
Symbol
cnot3a
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 3a
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121542899 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121542899 (cnot3a)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121542899 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121542899 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
121542899
NCBI-ProteinID:
XP_045064669
LinkDB
All DBs
Position
28:complement(21229884..21241942)
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AA seq
933 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKVIETQMERFKVVERETKTKAYSKEGLGLALKVDPAQRE
KEETGNWLTNTIDTLNMQVDQFESEVESLFIQTRKKKGEKEKQDRIEELKRFIERHRYHI
RMLETILRMLDNDSVQVDSIQKIKDDVEYYMESSQDPDFEENEFIYDDLDLEDIPAALVA
TSPTGMGNIEDEMFLHSSSTPTSTTSSSPIPPSPATCTAENSEDDKRRGRSTDSEVSQSP
AKNGTSSLLLSFSSSANSGSSSSSSSLVSMAAVVGGNPVVPTSNSLIGSFSSAVQHQPQP
PQQPIQQPQQQPQQPQTKPCTPSPPNHPLLSASPSLPTPTTPISASPNSLPQVSSGHILT
SSLGLGLGLGKVGMTGTSSANSMSGLGLTGMSASLNTMAGLLSGSTHAPYAQAAASGGLG
LSTTTQSSVSVESSSIPTSCSSGVTINGAGTGLGLLGSSPAHGSLTGGILGLVPGQSVIP
GPPQIPLSPVGAAPGGAVGIMGGNGGSMGPIGGGVGSNAAPARPPSGLKQNGSTSYSAVV
AESTAESAFSTPSQSQSSQPSSLTSSASQPMDNGPSLISSITLPPSSPSPSFSDSIPGGG
SLLNGPHSYTQASEGLKLPTDLRQILMETRMSAQAPEPPGAMATATNTRKRKQCQAPEPL
SSLKAMAERAALGSGLDGEIPNLHLTDRDIFSGSSAAPGTPAAPQPSLSEVSIPPSLGXC
PLGPTPLSKDQVYQQAMQESAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQMPPHHSDSI
EFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFE
QGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaactccaaggtgaaattgacagatgtttgaaaaaggtagctgaa
ggcgtagaacagtttgaagacatttggcagaagcttcacaatgcagccaatgccaaccaa
aaggaaaaatatgaggcagaccttaaaaaagagataaaaaagttacagcgattgagggat
cagataaaaacatgggtggcatcaaatgagatcaaagacaaaaggcagctagtggagaat
cgcaaggtcatagagacgcaaatggagcggtttaaggtggtggagcgggagacaaagacg
aaggcctactctaaagaaggcctggggctcgccctgaaagtggacccagctcagagggag
aaagaagagacgggaaactggctaacgaatacgatagacactctaaacatgcaggttgac
cagtttgagagtgaggtggaatccctcttcattcaaaccagaaagaagaaaggagaaaaa
gagaaacaggatcgcattgaggagctaaagaggtttatagaaaggcataggtaccacata
cgcatgctggagaccatcctacgcatgctagacaacgactcggtgcaggtggactccatc
cagaagatcaaggacgacgtggagtactacatggagtcatcacaggacccagactttgag
gagaacgagttcatttacgacgacctggatctggaggacatccctgcagcgctggtggcc
acctctccgacgggcatggggaacatagaggatgagatgttcctccactcgagcagcact
cccacctccaccacctcctcttcccccatccctccatcaccggccacctgcactgctgag
aactcggaggacgataagaggagagggcggtcgacagacagtgaagttagtcagtctcct
gcgaagaacggcacttcctccttgttgttgtccttttcctcgtccgccaattccgggtcg
tcctcttcttcctcctctcttgtctctatggccgccgttgtcggaggcaaccctgtggtt
cccacaagcaacagtctaataggaagcttcagcagcgccgtgcaacatcagcctcaacct
ccacagcaaccaatccagcagccacagcaacaaccacaacaaccccaaacaaaaccttgc
acccccagcccacccaaccaccccctcctctccgcctccccctctctccccacacccacc
acacccatctcagcctccccaaactccctgccccaggtctcgtctgggcatatcctcacc
tccagcctaggccttgggttgggcctgggtaaagttggcatgacggggaccagcagtgcc
aactcaatgtctggtctgggcctgactggcatgtctgcctctctgaacaccatggcaggc
ctgctctctgggtccacccatgccccttatgcccaggcagccgcgtcgggaggcctgggt
ctgagtaccaccacccagtccagtgtctcagtggagagctcctccatccccacctcttgc
tccagtggagtgaccatcaacggggctgggacagggctgggcctgctggggtccagccca
gcacacggctccctgactggggggatcctgggcctggtacctgggcagagtgtgatccct
gggccccctcagatccctctcagcccagtcggtgctgcccctggaggggcagtggggata
atgggaggaaatggaggaagcatggggccaatcggaggaggagttgggtcgaatgcagcc
cctgccagaccgcccagtggactgaagcagaacggaagcacaagttacagtgctgtggtg
gcagagagcacagcagagtccgccttcagcacacccagccaatcacagagcagccagcct
tcctcgttgacctcctcagccagtcagcctatggacaacggtcccagcctcatcagctcc
atcaccttgccccccagctctccgtccccctcgttttcggacagtatccccggtggtggg
agtctcctcaacggaccccactcctacacacaggcctctgagggcctcaagcttcctaca
gacctccgtcagatactgatggagaccagaatgtcagcgcaggccccagagccgccaggg
gccatggctacagccacaaacacacgaaagagaaagcagtgtcaggccccggagcctctg
agttctctgaaggcgatggctgagagagcagcactaggatcaggtctagatggagagatc
cccaacctgcacctcacagacagagacatcttctctggttcgtcggctgcccccggcacg
cccgcggccccccagccctccctgtcggaggtgagcatccccccttccctggggntgtgt
cccctgggtcccactcccctctccaaggaccaggtgtaccagcaggccatgcaggagtct
gcctggacacacatgccgcacccctcagactcagagaggatcaggcaatacctgatgagg
aacccgtgccccaccctgccattccatcatcagatgcccccccatcactcagactctata
gagttctaccagagactgtccacggagacactcttcttcatcttctactacctggagggc
actaaagctcagtacctgtcagcaaaggctctgaagaagcagtcgtggaggttccacacc
aagtacatgatgtggttccagaggcacgaagaacccaagaccatcactgatgagtttgaa
cagggcacttacatctactttgactatgagaagtggggccagagaaagaaggaggggttc
acctttgagtacaggtacctggaagaccgagacctgcagtga
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