Coregonus clupeaformis (lake whitefish): 121543155
Help
Entry
121543155 CDS
T08357
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121543155 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121543155 (smarcc1a)
03036 Chromosome and associated proteins [BR:
cclu03036
]
121543155 (smarcc1a)
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121543155 (smarcc1a)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121543155 (smarcc1a)
PBAF complex
121543155 (smarcc1a)
GBAF(ncBAF) complex
121543155 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
121543155
NCBI-ProteinID:
XP_045072321
LinkDB
All DBs
Position
Unknown
AA seq
1097 aa
AA seq
DB search
MATAATAAGGTGSGGPAAGPVGVGTAVCRKKDGGPSSKYWESAETVSQIDSVRQWIGKHY
KKYVQADSPSNKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPTKSFLDFKAGGALCHILG
STYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKTLVQNSCLTRPTVFLVPDMEQKQANK
LKDIIKRHQGSITEDKSKATHHIYPSPTPQEDDEWLRPVMRKDKQVLVHWGMYPDSYDTW
VSTSDVEGDVEDPPTSEKPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKTVSFRQRIFPR
EEESSRTPDRKERKANAAGKKRRRSPSPPTTPAESRKKGGKKGNPGSHWKRRGHRGEEEE
EEEDLTKDMEDPSPVPSMEEVTLPKNVNPKKDSENTPVKGGAVADLDDLEDGSVVSGGKE
EEEQGKADVNRLIDSSEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSK
SPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDAE
SRPLPMGPPPTPHFNVLADTPSGLTPMHHRPPQIPSGQQMLNFPEKGKDKPSDMQNFGLR
NDLYSKKNPKSKGTSGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLR
LPIEDPYLENSESSLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFS
RVREEVPAELVEAHVKKVQEAARSTGKVDPAYGLESSGIAGTAPEEPEKTEPAETEKMDT
DSDSQQPDKAESKDEAEKPSESAEKPAEGEKVKSETAEPSEREEGESEGGEGKATADKGK
EEAMETSEEDKEKEDQGTMDEEEEERKKLESDGGEGNIATAAAAALASAATKAKHLAAVE
ERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLK
YAEMKARQQMEQQQANAAAQGPTPHHGPPGPGMHHGPTHHGPPPAMHSGHGPPGPGFHPM
GPHHPQQTGPMGGPSQPMPGRMMPGGPPPGSMPPMMGPRHPGAPNGMYPGPSPVQPDGMP
PASVGPQAAAPARVADN
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcaactgcagcgggtggaacgggttcagggggaccagcagccggccct
gtgggcgtcggtactgcggtgtgccgtaagaaagatggaggtccttcctcgaaatactgg
gagagcgcagaaactgtctctcagatcgattcggtgcgccaatggatcgggaaacactac
aaaaagtatgtacaggcagactctccctccaataagtccctggcagggctggtggtgcag
ctgcttcagttccaggaagatgctttcggacggagggtcaacaaccctgccctcaccaag
ttacctaccaagagcttcctggacttcaaggcagggggtgctctgtgtcacatcctgggc
tccacttacaagttcaagagcgagcagggctggcgaaggtttgacctgcagaacccctcc
aggatggacaggaatgtagagatgttcttgaatgtagagaagaccctggttcagaatagc
tgcctgactcgaccaaccgtgttcctggtgcctgacatggagcagaagcaggccaataag
ctgaaggacatcatcaagagacaccagggctccatcactgaggataagtctaaggctacc
catcatatctacccctctccaaccccgcaggaggatgatgagtggctgcgtccagtcatg
cgtaaagacaagcaggtgctggtgcactggggcatgtacccagacagttatgacacctgg
gtgtccaccagcgacgtggaaggggatgtggaggatccacccacctctgagaagccctgg
aaggtgcatgccaagtgggtcctggacaccgatgccttcaacgagtggatgaatgaggaa
gactatgaggtggacgagaacaagaagactgtgagcttccgccaaaggatcttcccaagg
gaggaggagtcttcccgtacacccgatcgtaaggagcgcaaggccaacgccgccgggaag
aagaggaggcgctcgccatctcccccgaccaccccagccgagtcccgcaagaagggcggc
aagaaggggaaccctgggtctcactggaagcgtcgtggccaccgtggcgaggaggaggag
gaggaagaggacctgaccaaggacatggaggacccctcgcctgttcccagcatggaggag
gtcactttgccaaagaacgtgaaccctaagaaagacagcgagaacaccccagtgaagggg
ggggcagtggctgatttggatgatctggaggatggctctgtggtctccggaggcaaggag
gaggaggagcagggcaaggccgatgtcaaccgcctcatcgactccagcgaggacaacgtg
accgagcagacccaccacatcatcatccccagctacgccgcctggttcgactacaactgt
atccatgagattgagaggcgtgcactgccagaattcttcaacggcaagaacaagtccaag
tccccagaaatatatctggcctaccgtaacttcatgatcgacacgtatcggctcaacccc
caggagtacctgacctccacctcctgccgcaggaacctgacgggagacgtgtgtgccgtc
atgagggtccatgcgttcctggagcagtgggggctggtaaactaccaggtggatgctgag
agccggcccctccccatgggccccccgcccaccccccacttcaacgtgctggctgacacc
ccctctggcctgacgccgatgcaccaccgccccccacagatcccctctggccagcagatg
ctcaacttcccagagaagggcaaagacaagccctctgacatgcagaactttggcctgcgt
aacgacctctactccaagaagaaccccaagagtaaaggaaccagcggcggccgggagtgg
accgagcaggagaccctgctcctattggaggctctggagatgtacaaggacgactggaac
aaggtgtcggagcacgtgggctcgcgcacccaggacgagtgtatcctgcacttcctgcgt
ctgcccatcgaggacccctacctggagaactctgagtcgtccctgggccccctggcctac
cagcccgtacccttcagccagtcaggcaaccccgtcatgagcaccgtggccttcctggcc
tccgtggtggacccccgcgtggcctccgccgccgccaaggcagccctggaggagtttagc
cgtgtgcgtgaggaggtgccagcagagctggtggaggcccatgtgaagaaggttcaggag
gcggcccgcagcacaggcaaggtagaccccgcctatggcctggagagcagcggcatcgca
ggaaccgcccccgaggagcccgagaagactgagccagcagagacagagaaaatggacaca
gactccgactcccagcagcctgacaaggctgagtctaaggatgaggcggagaagcccagt
gagtctgctgagaagccggccgagggagagaaggtgaagagcgagacggccgaaccgtcg
gagcgggaggagggagagagcgagggaggagagggcaaggctacagcagacaaaggcaag
gaggaggccatggagacctcggaggaggacaaggagaaggaggatcagggaacaatggac
gaggaggaagaggagaggaagaagctagagtcggacggaggggaggggaacatcgctact
gcagccgccgctgccctcgcctcagctgccaccaaggccaagcacctggcggcggtggag
gagaggaagatcaagtctctggtggctctgctggtggagactcagatgaagaagctggag
atcaagctcagacactttgaggagctggagaccatcatggaccgagagaaagaggctttg
gagttgcagaggcagcagctgctgacggagcgccaggccttccacatggagcagctgaag
tatgctgagatgaaggcccgccagcagatggagcagcagcaggccaacgcagcggcccag
ggacccacaccccaccatggccccccaggcccaggcatgcaccacggacccacccaccac
ggaccccctcccgccatgcactccggacacggcccccccggccccgggttccaccccatg
ggtccccaccacccgcaacagacaggaccaatgggagggcccagtcagcccatgccaggg
cgcatgatgcctggcggcccccctcctggcagcatgcctcccatgatgggcccccgccac
cctggagcccccaacggcatgtaccctggcccctcgcctgtacagcctgatgggatgccc
ccagcgtctgtgggacctcaagctgcagccccagcacgagttgctgacaactaa
DBGET
integrated database retrieval system
