Coregonus clupeaformis (lake whitefish): 121543329
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Entry
121543329 CDS
T08357
Symbol
cstf2
Name
(RefSeq) cleavage stimulation factor subunit 2 isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121543329 (cstf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121543329 (cstf2)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
121543329 (cstf2)
U7-dependent histone pre-mRNA processing factors
121543329 (cstf2)
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Ortholog
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Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
DUF8400
Motif
Other DBs
NCBI-GeneID:
121543329
NCBI-ProteinID:
XP_045063813
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Position
3
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AA seq
608 aa
AA seq
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MATLAAAVVAAAGRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRET
GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPIIES
PYGDNIMPDEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAFALL
QAQVVMRIVDPEIALKMLHRQTPVQPLVPNSQAGPVPVANQPIPPPNAPVSQSQPMPGMH
MNGAPQMMQPPPMGGGPGPMPGQGPVGPPGGIQPPMGMPQGGPVPIDRGQGNLQHSPVGS
SGQAAIERPQGPGGIPPRGLLGDGPNDPRGGTLLSVTGEVIEPSRGGGFIGAPPPHQGPP
MHMNQMAGGPPPDMRPPHDMRGPPMGEPRGMMGEPRGPPMGEPRGMMGEPRGPPMGEPRG
MMGEPRGPPMGEPRGMMGEPRGPPMGEPRGMMGEPRGPPMGEPRGMMGEPRGPPMGEPRG
MMGEPRGPPMMEPRGPPMETRGRDPRAVDTRGPVSGQRVPMAQGMQGPPPHSMNPNAPPP
ARPGPGVPQSGGSFSPGQSQVTSQDHEKAALIMQVLQLTPEQIAMLPPEQRQSILILKEQ
IQKTAGAP
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggcaactttagcagctgccgttgttgctgccgctggcagagatcccgctgttgatcgt
tcattgcgctctgtctttgtgggaaacattccatatgaggccacagaggagcaactgaaa
gacattttttcagaagtcgggcttgttgtcagcttcaggttagtgtatgatagggagaca
ggcaagccaaaaggatatggcttctgtgagtatcaagaccaggagacggccctcagtgcc
atgcggaacctgaacggaagagagttcagcggccgtgctctccgtgtcgacaatgctgct
agtgagaagaacaaagaagagctcaagagtttggggacgggggcccccatcattgagtct
ccctacggggacaacataatgccagacgaggctccagagtctataagcagagctgtggcc
agtctgcccccagagcagatgtttgagctcatgaaacagatgaagctctgtgtgcaaaac
agtccccaggaggccaggaacatgcttttgcaaaacccccagctggcctttgccttgctc
caggcccaggtggtcatgaggatcgtagaccctgagattgccttgaaaatgcttcaccgt
caaaccccagtgcagccattggttcccaacagtcaagctggaccagtgccagtggccaac
cagcctattccaccgcccaatgcgccagtctcccagtcgcagccaatgccgggcatgcac
atgaacggagccccccagatgatgcagccccctcccatgggtggaggacctgggcccatg
ccagggcagggaccggtgggaccaccaggtgggatacagccaccgatgggaatgcctcag
ggaggtcccgttcctatcgataggggacaaggaaacctccagcactctcccgtaggatcg
tctgggcaggctgctatcgagcgacctcaaggaccaggtggtatcccccccagaggactg
cttggtgacggccccaatgacccccgaggaggaaccctgctctcagtcacaggagaggtc
atcgaaccaagtcgaggaggaggcttcatcggtgcccccccaccacaccaggggcccccc
atgcacatgaaccagatggctggcgggcctcctccggacatgaggccaccccacgacatg
agaggacctcctatgggtgaacccagaggcatgatgggagagccccgaggaccccccatg
ggtgaacccagaggcatgatgggagagccccgaggaccccccatgggtgaacccagaggc
atgatgggagagccccgaggaccccccatgggtgaacccagaggcatgatgggagagccc
cgaggaccccccatgggtgaacccagaggcatgatgggagagccccgaggaccccccatg
ggtgaacccagaggcatgatgggagagccccgaggaccccccatgggtgaacccagaggc
atgatgggggaaccccgaggaccccccatgatggagcccaggggaccccccatggagacc
agaggtcgcgaccccagagcggtggacacacgtggaccagtgtcaggccagagggttccc
atggcccaaggaatgcagggtcccccccctcactccatgaatcctaatgcccctccacct
gccagaccgggtcctggtgtaccacagtccggaggtagcttcagcccagggcaaagccag
gtgacctcacaggaccatgagaaggccgccttgatcatgcaggtgctgcagctgacccca
gaacagattgccatgctgcccccagagcagaggcagagcatcctcatcctcaaagagcag
atccagaagaccgccggggcgccctaa
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