Coregonus clupeaformis (lake whitefish): 121543405
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Entry
121543405 CDS
T08357
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04210
Apoptosis
cclu04218
Cellular senescence
cclu04620
Toll-like receptor signaling pathway
cclu04621
NOD-like receptor signaling pathway
cclu04622
RIG-I-like receptor signaling pathway
cclu04623
Cytosolic DNA-sensing pathway
cclu04625
C-type lectin receptor signaling pathway
cclu04920
Adipocytokine signaling pathway
cclu05132
Salmonella infection
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121543405
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
121543405
04218 Cellular senescence
121543405
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
121543405
04621 NOD-like receptor signaling pathway
121543405
04622 RIG-I-like receptor signaling pathway
121543405
04623 Cytosolic DNA-sensing pathway
121543405
04625 C-type lectin receptor signaling pathway
121543405
09152 Endocrine system
04920 Adipocytokine signaling pathway
121543405
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121543405
09171 Infectious disease: bacterial
05132 Salmonella infection
121543405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121543405
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
121543405
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
121543405
NCBI-ProteinID:
XP_041709184
LinkDB
All DBs
Position
3:27592029..27627945
Genome browser
AA seq
928 aa
AA seq
DB search
MAEEDAYLAHPQYFDIEPLWDPLNFPPMSLTNSLRTADGPYLQIIEQPKQRGFRFRYGCE
GPSHGGLPGASSEKNRKSYPQVKICNYQGLARVVVQLVTNSKDAHLHAHSLVGKQCDKGI
CIADLQPKDSSISFPNLGILHVTKKNVSKTLEDRMTEAYRMGYNCGIVIHSDIDSFQGEV
RIPRELTDHQRNMICSAAHQQAKEMDLSVVRLMFTAFLPDSDGGFSRRLDPVISDPIFDS
KAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEDDETGLTWEAFGDFSP
TDVHRQFAIVFKTPKYRDLNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQIIDKEEVQRK
RQKTLPNFQDYSGQGGAGGMYRGPGGGGSATGGGPGSGGGGYFQGYSTYNNYGTGYSAGF
SPGMSGGGAGIKHAPQGRAEDSDDDSDVDDDPSSGAVVAVQAQSEDASAGETSEERGAGV
ELGPGDRTGECVLEAKLVDVAERQAEALFQYAVTGDVRYLLAPQRHLMTAQDENGDTGLH
LGVIHSQTDAVRSLAQVLSVLPGEEVLNMRNDLYQTPLHLAVITQQKVAAEALLLAGADV
TLSDRHGNTALHLATQQKEGGMVECLLRHREVVELVDLPNAAGFCSLHLAVLANNLCSLR
DLLVSGGSVEVQERSCGRTALHLATELDNVSLAGCLLLEGNADVDCCTYNGSSPLHIAAG
RGSVKLTALLMAAGANPHKENFEPLFFREDDCCVDEEEEEEQDEGYIPGMTPLNMAATPE
VLEILNGKEYKPETTIPVFIPPQGDMQSLGSDTKQALCQALECQGGSWESLAHTLGLGIL
NSAFRLSPSPASTLLDSYEVSGGRVKDLLEGLRTVGNCTALTVLQGALCETEQAPQSTTE
LLGRVQDLKLDGREDSGVCDSGVELSTV
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagaggatgcttacctggctcacccacagtactttgacatagagccactatgg
gatcctctgaatttccctcccatgtcactcaccaactcactccggacagcagatggacct
tacctccaaatcattgaacagcctaaacagcggggcttcaggttccgttatggctgtgag
gggccctctcacggcgggctcccaggggcctccagcgagaagaacaggaagtcctatccc
caggtcaagatctgtaactaccaggggttggcacgtgtggtggtacagctggtgaccaac
tctaaagatgcccatctccatgcccacagtctggtgggcaagcagtgtgacaagggcatc
tgcatcgcagacctacagcccaaagactccagcatcagtttccccaacctgggcatcctc
cacgtgaccaagaagaatgtgagtaagaccctggaggaccgcatgactgaggcctacagg
atgggctacaactgtggcattgtcatccactccgacatagattccttccagggagaggtc
cgcatcccccgggagctcactgatcaccagagaaacatgatctgcagcgcagcgcaccag
caggctaaagagatggacctaagcgtggtgcgcctcatgttcacagccttcctcccagat
agtgacgggggcttctcccgtagactggaccccgtcatatcagaccccattttcgacagc
aaagctcctaatgcatccaacctgaagatagtgcggatggaccgcacagctggctgtgtg
acaggaggagaggaggtctacctgctctgtgacaaggtccagaaagatgacatccaggtg
cgcttctatgaggatgatgagacagggctgacatgggaggcctttggggacttctccccc
actgatgtacatcgacagtttgccattgttttcaagacccccaaatacagagacctgaac
ctccagaagcccacctcagtgtttgtgcagctgaagcgtaaatcggacaacgagacgagc
gagcccaagcccttcacctaccacccacagatcatagataaggaagaggtgcagaggaag
agacagaagaccctgcctaacttccaggactacagcggccaaggtggagcagggggcatg
taccggggaccagggggaggaggctccgctacggggggaggacccggctctgggggagga
ggttacttccagggctattccacctacaataactacggcactggctatagcgctggcttt
tcccctggcatgagtggtggcggagcgggtattaaacatgctccacagggcagagcggag
gacagcgatgatgacagcgacgtggacgatgacccgtcctcaggggcagtggtggcggtc
caagcccagtcggaggatgcctctgctggggagacaagtgaggagagaggggctggtgtg
gagctaggaccaggggacaggactggagaatgcgtgctggaggccaagctggtggatgtg
gctgagaggcaagctgaagccctcttccagtacgccgtcactggagacgtccgctacctg
ctggctccacagcgccacctcatgacggctcaggatgagaacggtgacactggtctccat
ttgggcgtgatccacagccagacagacgcagtcaggagtctagcccaggtcctctctgtc
ctgcctggagaggaggtcctcaacatgaggaatgacctctatcagactcctttgcaccta
gcagtgataacccagcagaaggtggcggccgaggccctcctattggctggggctgatgtc
actctgtctgatcgccacggaaacacagctctacacctggccactcagcagaaggaggga
gggatggtggaatgtctactaagacacagagaggtggtggaactagtggacctccccaac
gcagcaggattttgctccctccacctggctgtgctggccaacaacctgtgttccctcagg
gacctcctggtgagcgggggcagtgtggaggtccaggagaggagctgcggccgcacggcg
ctccacttggccactgagctggacaatgtctccctggcaggctgcctgctactggagggg
aatgctgatgtggactgctgcacctacaacggctccagccctctccacatagcagcaggg
cggggctctgtcaaactgaccgctctcctcatggctgcaggtgccaatcctcacaaagaa
aactttgagcccctgttcttcagagaggatgactgctgtgtggatgaggaagaggaggag
gagcaggacgaaggctacatcccagggatgactcctcttaacatggctgccactcctgag
gtattggaaattctgaatggcaaagagtacaagccagagaccaccatcccagtcttcatc
ccccctcaaggcgacatgcagagcctgggctcagacacaaagcaggcactatgccaggcc
cttgagtgccagggggggagctgggagagtctggcgcacacgctggggctgggcatcctc
aacagcgccttcagactcagcccctcccccgccagcacgctgctggacagctatgaggta
tccgggggaagggtcaaggaccttttggagggactcaggacagtgggaaactgcaccgct
ttgacagtactgcagggggcactgtgtgaaacagagcaggctccccaaagcaccacagag
ctcttaggacgtgtgcaggatctaaagctggatggacgggaggacagcggtgtgtgtgac
agtggggtggagctctccacagtgtga
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