Coregonus clupeaformis (lake whitefish): 121543543
Help
Entry
121543543 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase Hakai-like
KO
K15685
E3 ubiquitin-protein ligase Hakai [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121543543
04131 Membrane trafficking [BR:
cclu04131
]
121543543
04121 Ubiquitin system [BR:
cclu04121
]
121543543
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121543543
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
121543543
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
121543543
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121543543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_Hakai
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-RING_5
zf-C3HC4_3
DZR
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
121543543
NCBI-ProteinID:
XP_041709428
LinkDB
All DBs
Position
28:31976244..31980113
Genome browser
AA seq
487 aa
AA seq
DB search
MDQSDNDLQGTDGSGSLGGPDVRRRIPIKLISKPTIRSKPVPRTQRPMGRLPSKPQAGDE
ESFSFKQEERFDCGTKAGDVFASQRRFPQQMFWDFKLNLIGEKDDIPAHFCDKCGLPIRI
YGRMIPCKHVFCYECALLHEKKGDKMCPGMQLFSCTDLVQRIEQCLRGSLYMCSIVQGCK
RTYLSQRDLQAHINHRHMRAAKALASRQDALHLPTSSDVPDRFRVPPPHLPKTQGHLPPP
LQHGGHDPYGQPPPASHDAPPLAQETFRIATVTTRARSNLITVPIQDDSGSSSTSSSRDP
LPPGPGPAPPPHHHPGDYAGQPVVSHPHHMMAPPQQHYGPPPPPPPPINHPMQHPPQGSG
TSHMVYNQAGPPPPMSNAPPPITPPPGHIMGQMPPYMNHPPPGPPPQHGGPPVNAPPPHH
YNPNSMQQFPEDQGTLSPPFNQQGGLSPGMWPAPRGPPPPRMQGPPPQGQMPGPHHPDQS
RYRPYYQ
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggaccaaagtgacaatgacctgcaaggcacggacggctcggggagtcttgggggccct
gatgtccgcagacgcatccccatcaaactcatctccaaaccgaccatcaggagcaaacct
gttccccggacacaaagacccatgggcaggctgccctccaaaccccaggctggggatgaa
gagagttttagcttcaagcaagaggagaggtttgactgtggtaccaaggctggggatgtg
tttgcaagtcaacggaggttcccccagcaaatgttttgggactttaagttgaatttgata
ggtgaaaaggatgacattccagctcacttttgtgacaagtgtggtctgcccataaggatc
tatggacgcatgattccatgcaaacatgtgttctgctatgagtgtgcattgctccacgag
aagaagggagacaagatgtgcccaggtatgcagctcttcagctgcacagacctggtccag
cgcattgaacagtgtctgcggggttccctgtacatgtgcagcatcgtgcagggctgcaag
cgcacctacctttcccagcgtgacctgcaggcccacatcaaccaccgccacatgagggca
gctaaggccttggcaagccgccaggatgccctgcaccttcccacatcctcagatgtgcct
gaccgcttccgcgtgcccccgcctcacctgcccaagacccaagggcacctcccacccccc
ctccaacacggtggtcatgacccctacggtcagccaccaccggcttcccatgatgcgcct
cctcttgcccaggagaccttccgcatcgccacggtaactacacgcgcacgcagcaacctc
atcaccgtgcccatccaggatgactccggttcttcctccacatcttcctcccgtgaccct
ctccctcccggcccgggtcctgctccacccccacaccaccaccccggggactacgctggt
cagcctgtagtgtcccacccccaccacatgatggcgcccccacaacagcactatggcccc
cctcctcctccccctccacccatcaaccaccccatgcagcacccgccccagggctctggg
acatctcacatggtgtacaaccaggcaggccctcccccacctatgtccaacgcaccccct
cccattacccccccgccaggacacatcatgggtcagatgcccccctacatgaaccaccct
cctccaggccccccacctcaacatggtggtcctccagtcaacgccccccctccccaccac
tacaaccctaactccatgcagcagttccctgaggatcagggcacactcagtccacctttt
aaccagcaagggggtctgagccctgggatgtggcctgcccctagagggccgcctcctcca
cgaatgcaaggccccccacctcagggccagatgcctggaccccatcaccccgatcagtcc
cgctatcgcccttattatcagtaa
DBGET
integrated database retrieval system
