Coregonus clupeaformis (lake whitefish): 121543625
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Entry
121543625 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: mRNA-decapping enzyme 1B
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121543625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121543625
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121543625
mRNA degradation factors
5'-3' decay
Decapping complex
121543625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
mRNA_decap_C
WH1
Motif
Other DBs
NCBI-GeneID:
121543625
NCBI-ProteinID:
XP_041709578
LinkDB
All DBs
Position
Unknown
AA seq
688 aa
AA seq
DB search
MTASSSGGNTCLTAKGLDISLAALQRQDPYINNIVDVASQVALYTFNNRSNEWEKTDVEG
TLFVYTRLASPRHGFTIMNRLNMENLTEPITKDLDFQLQDPFLLYRNARLAIYGIWFYDK
ADCQRIAELMKNLTKQEQALAQLGQQAQGQGGLVSPRALEAAGDPGKGQGVDILQMLTKA
RNEYDKGGNPEPKEIGGCNVLDDNPNLIKPIPVKPMERYPQAVLQERPVQDSQGEPRPLS
LATLFGVQQPRPELVSPMAGSGSGGPGSQPQGKPGGVRPAVARSLSYEDPVQAQLQAQEG
VLISGSSPPQHCPAFQKLMRDASSFSSQPQNQLQRGGPMELLQPVSESPENGAPSALQHH
QQIQARQDPIQRLFQNHPTSTTPSMASSTPCCSHPPPPLIPGLQSARPQPLLVDALGFPG
SQHHHHHPHLHLPPHQAQPLYFRPTKPPQMLVPLQPSHPSQSQPPTKPSLAILNLNHSPL
TLSPPSSNPSPTPSPFTSNPSQVTPSRCLTGVVSPHELLQRLQLVQQEQSLVPEPTRPSS
NLAPRFHEPAPPAMGQHGQQSAHSTARSLDSWADMNSAGTAAQKFQVISPKRIPATVAPT
LLLSPSVFSQAKRPQPKAPGDPHCSPGPHLPSALMAPQAPEDPHPRGLSKNQLQATLLHL
IQNDSSFLDTIYECYAHRFSAEATANKF
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaagctcatcgggtggaaacacctgtctcactgctaaaggtttggacattagt
ctcgccgccctgcaaagacaagatccttacatcaacaacattgtagatgtggcgagtcaa
gtggcgttgtatactttcaacaaccgatcaaatgagtgggagaagactgacgtggagggg
accctgtttgtgtacacaaggctggcgtctcccagacatggcttcaccataatgaacagg
ctgaatatggagaacttgactgaacccatcactaaagacctggacttccaactgcaggac
cccttcctcctctacaggaacgctcgcttagctatctatggcatctggttctatgataag
gcggactgccagcgcatcgcagagcttatgaagaatctgacgaagcaggaacaggcccta
gcccagctgggtcaacaggcacagggtcaggggggcttggtgtctcctcgagccctggag
gcagcaggggaccctgggaagggacaaggagtggacatcctgcagatgctgaccaaagca
cgcaatgagtatgacaagggtggtaatccagagcctaaggagataggaggatgtaatgtc
cttgatgacaaccccaacctgatcaaacctatccctgtcaaacctatggagagatatccc
caggctgtgctacaggagaggcctgttcaggatagtcaaggagagcccaggcctctctct
ctggccactctgtttggtgtccagcagcccagaccagagctggtctctcccatggctggg
tcagggtcaggaggtccagggtcccagccccagggtaagcctggaggtgtccgcccggcg
gtggcccgctccctgtcctacgaggacccagtccaggcccagctccaggcccaggaaggg
gttctgatctcgggtagcagccccccacagcactgccctgccttccagaagctcatgagg
gatgcttcctccttctcctcccagcctcagaaccagctccagagagggggtcccatggag
ctgctccaacccgtctccgagtcacccgagaacggagccccctctgccctccaacaccac
cagcagatccaggccagacaagaccccatccagagactgttccagaaccatcccacttcc
accaccccttcgatggcctcctccactccctgttgttcccacccccctcctcctctcatc
cctggcctccagtctgcccgtcctcagcctctcctggtggatgctttgggcttccctggt
tctcaacaccatcaccaccaccctcacctccacctcccccctcaccaggcccagccgctg
tacttcagacccaccaagcccccccagatgctggtgcccttgcagccctcacacccctcc
cagtctcagcctcccaccaaacccagcctggccatcctcaacctcaatcacagccctctc
accctttcccctccttccagcaaccccagtcccacccccagccctttcacctccaacccc
agccaggtcacccccagccggtgcctaactggtgtcgtctccccccatgagctgctccag
aggctgcagctggttcaacaggagcagagtctggtcccggagcccactaggccttcctcc
aacctggccccccgcttccacgagccagcccccccagccatggggcagcacggccagcag
tcagctcattctacagccaggtctctggacagttgggctgacatgaactctgcaggcacc
gctgctcagaagttccaggtgatctcccccaagcgtatcccagccacggtggctcctacc
ctcctcctgtcccccagtgtcttctcccaggccaagcgcccccagcccaaagcccctggg
gacccccactgctcacctggccctcatcttccctcagcccttatggccccacaggcccct
gaggacccccaccccaggggcctctctaagaaccagctccaggccaccctgctgcacctc
atacagaacgacagttccttcctggataccatctatgagtgctacgcccaccgcttctcc
gcggaagccaccgcaaacaagttctga
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