Coregonus clupeaformis (lake whitefish): 121543640
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Entry
121543640 CDS
T08357
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cclu03009
]
121543640
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121543640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
LptC
Motif
Other DBs
NCBI-GeneID:
121543640
NCBI-ProteinID:
XP_045064415
LinkDB
All DBs
Position
28:complement(3315588..3341959)
Genome browser
AA seq
2844 aa
AA seq
DB search
MKIKSKSSYHKSENTFRFLTFAERLANVNIDVIHRIDRTGSYDEEIDTYFSEGLTKWRDL
NLTEHFTTFLREVSNKSQSFNLLVFHQRSIVESLKTHLSTKNSLACQPLLDLVVQLARDL
QMDFYPHFPDFFVLITSLLETQDTEILEWAFTCLSYLYKYLWRLMVKDMTKMYSLYSTLL
AHKKEHIRKFAAESFSFLMRKVPDLDALLNHMFLDLEEHPGKAEGVGQLLFEMCKGVRNM
FHSCAGTTLPVALRKLGPSADQEVSLPWDAVRDALDQMAQAAANHVEKEHFLVLWESLQT
CVSEVLRNLNKTDVVDEQEEGQASEHLERLLFILHTLVGHRNGDKITKPDTVCQTVHELL
QTPALPGPCCRLVLQIISSLLLGENVSLPNIVTQDTVKMVFSSGMDQDLILEFTKEMFTM
KRFEQFFLPSLLQYLEGLFSSVDSVSRHSALEVLVSLILAKAPPPTDGSMAFEIYPLVFT
GNTPSKEPGDGTEKVSVPELILSLISLPQDQNHTITDLSLPWAALVLLPHLRPLAAGSVV
PSLTALINRLLLNVESEALGKGGLFVARQALSSLLSLNGSAEVLSLVPVERVKTIMQKFP
TDMSALLLGDLYYTRLSVNGCSEHLSHSALLDLHQMLHVNLSSNSSKIRLLTLRILTHFE
AELKPSEGEESVEIQPVFAVCFQAELVPASVQDYREKLLHLRKLRHDLVQRSLPQGQQGT
FQQVPLRYLISMLFINFKPLWDPVIELIVTHARGMENKDFWKVYHEQLELVAGLAEKELR
EGDDDEECEDGGSELQGEPGCDVIESGDVGVLFLQRLKMTSDPSERTDFTNFRGLLWRAM
ALVPDRVEPRSRELSPLMLRFIRNEFYPADLLVAPTQDLRKRSSPAAMEASMAGEEEEDR
EEEEEEARPERKMPPKRAAAKQLIAHLKVFAKFTNPRSLYLENSLNELYTQLLCHQDQQI
QRAALECVLTYKDPNVLPYKENLERLLDDKYFKDEIVHFNVSEEKAVVDASHRAQLIPLL
MRVLFGRMRSKTGSKFQGKSGAVQRSSIVLRFLAGCQSEELGMFIDLLLEPVCHHGQGLC
LAAVDKAIAETDSSAVLPLGRQHSLLNIVNTVISKLGHLIHTHLPKVLQILLCVTASIST
ILNQREQLKAGCIAPLKNLRRLGVLRIQDFFDGFDSYSFTPDELDAVFQAIVWPQVCRLP
TESPYSPTPLLKLIHVWSKNARYFPLLAKQQSGHPECDVLLNVFALLSAKNVSTQTVAMV
MDIAESLVTTKDLLVTEGEEAELSVNGSVFPQPPEGAYISEEHLTQGARLLLPHISTLLQ
YLSGIVRNSDRLKKKKFRSQVAKELNILSKISRFVSDKDQSSVLISLLLPYLQKARNPQE
TEIDILATVQNLLRQCSDPSSFLKPISRLFSILHNKLPRQALTSLFQTLADLDSGLKYIT
DTAAKLNAFDSRHLDEVYFDVRLTAFQEATRRINDMDTLDMNFIYTIMHNCFASFEIGDM
SLADNATLCLSAVLTRLAAVGRGEEEYKEIVQYTILDAVRKGLRSKTESVQHGYTTVLAC
LVKTFPTRRDFRDLVQLTDYNDPESDFFEHMKHIQIHRRGRALRKFAKQLTEGTVVMSSR
SLQNFIMPYAMTALFDEKMLKNEGMTSASVEVVGAVCRRLTWSKYLYYLKHFVHILHTGQ
AEQKLAVSLLVTVLEAFHFDHDTLEREMEAAKIRAKEVVSTVVDEEGDEEEEVAAVESEE
SDTEEAMETETINSDTKTTTIETAKVVTMETDAAETVEGVAMETNATESTAEPKTVPVKK
PTPSATAPAAPSGLPQNKAELEALITSIHATVQNAVLPRLHKCLTAKVKRDEECKAVKSK
DVKEEEVARVPIAFAMVKLMQTLPTTVMDVNLPGILMKMCVLLRNRFQEIRDVARNTLIK
IIETLGVKYLQYLLKEMKSILVKGYQVHVLTFTVYQLLSHLVPILKPGDLDHCMGLLIDI
FNNELFGAVAEEKEVKGIVSKLMEARHSKSMDSYEFLGQYSGKDRVIQLILPMKDILENT
ANLKTARRAHAVLKRIVSGLLVNQAMDHQAILLLSHGLVSESLPLVTKRNKDKKPQAPPD
PRLPPPSCLLLPPTPKRGGLKAPVSSRTNMHILVDTGLRLLHMSLKKSKVNSSEASALEM
LDPFFALLLDCLNSMHVKVITEALLAFTFLLRFPLPAVEQSAGQLTKQLFVLLKDYSKAG
AARGENFQLVQNCFKSITILVKNMKTHKITETQLQVLLGYAEEDIYDQSRQATAFGLLKA
ILSRKLVVPEMEELMKKVAKLSVNGQNGMIRVQCRHIYQKYILDYPLGKKLRSHLDFIVA
QLSYEFDTGREAALEMMAYIFQTFPQNLLLQHSGLFFVPMALAMVNDDSARCKKMAAVAI
KSLLSQLDQEHQNTLFTLVNTWLSADKVSLRRLGAQVCGLFVEVEGVQFGRRLDALLPLI
EKEIHPDNFEDIEEEQDEKAADRLLFSYLTLVTKLTKDCSLLELSKPQDTLTNILGHVET
HLRYPHCWVWLTASQLFGQLFAAHRPDQLVARWREETTEKGSANNTTPEPVATTFLTTNL
DKKMRELVLSFCHQLQSKYLDTSTGEQVIKNLLFVAKVIYLISPESEITPAQEVEEGGEE
EEMKENDEGEKDGEDEEGDEEEKQEEEEEDEKDDRPPSLLWMMKKLSLMAKREAADTPKI
PLKRTCVFKFLGAIAVDLGKDRLGPYLTTIIAPLYRELDSTYADQDPTLKNLSQELIELL
KKQVGLQIFSLAFSAVQKDASQRRANRKKHKAMQAVANPDIAARKKLKKHKNKIEAKKRK
IEFLRPGYKAKRQRNSLKDLAMVK
NT seq
8535 nt
NT seq
+upstream
nt +downstream
nt
atgaagataaaatccaagtcgtcgtatcataaatctgagaacactttcaggtttctcacg
tttgctgaaaggcttgccaatgtcaatatcgatgtcatccatcgcattgacagaactggg
agttatgatgaggagatagacacctacttttcagaaggactaacaaaatggagggacctg
aatttgactgagcatttcaccaccttcctgagggaggtgtccaacaagagccagtccttc
aaccttctggtgttccatcagaggtctatagtggagagcctgaagactcacctcagtacc
aagaacagcctggcctgccagccgctactggacctggtggtccagctggctagggacctc
cagatggatttctacccccacttccctgacttcttcgtcctcataacctctctcctggag
acccaggacacagagatactggagtgggccttcacctgcctctcctacctctacaagtac
ctctggagactcatggtcaaggacatgaccaaaatgtacagcttgtacagcacactgttg
gcgcacaagaaggaacacatacgaaagtttgcggcagagagtttttcttttctgatgaga
aaggtgccagaccttgacgcccttctcaaccacatgttcctagacctggaggagcaccct
gggaaggcagagggggtgggacagctgctgtttgagatgtgtaaaggagtccgcaacatg
ttccactcctgcgctggcacgaccctcccagtagctctgaggaagctaggaccaagcgct
gaccaggaagtctctctaccctgggatgctgtcagagacgcactggatcaaatggcccag
gcagcagccaatcacgtagaaaaagagcacttcctggttctgtgggagtctctacagacg
tgtgtgagtgaggtcctacggaacctgaataagacagatgttgttgatgagcaggaggag
ggtcaggcctccgagcacttggagcgtctgctcttcatcctccacaccctggtgggacac
cgcaacggagacaagatcaccaagccagacactgtctgtcagacagttcatgagttgctc
cagaccccagccctcccaggaccctgctgtagactagtgctccagatcatctcctctcta
ctgctgggggagaatgtctcactaccaaacatagtcacacaggacacggtcaaaatggtg
ttcagcagtgggatggaccaggacctgatactggagttcactaaggagatgttcaccatg
aaacggtttgaacagttcttcctgcccagcttgctacagtacctagaggggttgttctcc
agtgtagactctgtgtctcgtcactctgccctggaggtgctggtcagtctcatcctggcc
aaagccccgccccctacagacggctccatggccttcgagatctaccccctggtcttcacc
ggaaatacccccagtaaggagccaggtgatgggacagagaaggtgtcagtaccagagttg
atcctctcgctgatcagcctaccccaggaccagaaccataccatcactgacctgtccctg
ccctgggcagccctggtcctcctgccccatctcagaccgctggcagcagggagtgtcgtt
cccagtctgaccgccctcatcaatcgcctgctactgaatgtggagagtgaagcgctcgga
aaaggtggtctgtttgtggccaggcaggccctcagctctctgctcagtctgaatggatct
gctgaggtgctctccctggtgccagtggagcgggtcaagaccatcatgcagaagttccct
acagacatgtcggctctgttgctaggagacctctactacacccggctgtcagtcaacggc
tgctccgagcacctatcccacagtgcactgctcgacctgcaccagatgctgcacgtcaac
ctctcctccaacagctccaaaatccgcttgctgactctgaggattctgacccactttgag
gcagagctcaaaccgtcagagggtgaggagagtgtggagatccagcctgtgtttgcagtg
tgttttcaggctgagttggtccctgcctcagtgcaggactacagagagaagctgctgcac
ctcaggaagctcagacacgacctggtgcagagatcactaccccaggggcaacaagggacc
ttccaacaggtgcctctacgctatcttatttccatgctgttcatcaacttcaaacccctg
tgggatccagtcattgaactcatagtgacccatgccagaggaatggaaaacaaagacttc
tggaaggtctaccatgagcagctggagttggtggcaggtcttgctgaaaaagagctgcgt
gaaggtgacgatgatgaagaatgcgaagatggaggctcggagctgcaaggggagccgggc
tgtgatgtcatcgagagcggggacgtgggggtgctgttcctgcagcgtctgaagatgacc
tctgaccccagcgagaggacagacttcactaacttcaggggcctgctgtggagggccatg
gctctggtccctgaccgtgtagaaccacgcagtagggagctcagtccactgatgctacga
ttcatcaggaatgagttttacccagctgacctactggtagctcctactcaggacctgagg
aagaggagcagtcctgctgccatggaggctagcatggcgggagaggaagaggaggacagg
gaggaagaggaggaggaggctagaccagagaggaagatgccaccaaaaagagcagcagcc
aagcaactcatcgctcacctgaaggtgtttgccaagttcaccaaccctcgctctctgtac
ctggagaatagcctcaatgagctgtatactcagttgctgtgtcaccaggaccagcagatc
cagagggcagcgttggagtgtgttctgacctacaaagaccccaacgtcctcccctacaag
gagaatctggagaggctgctggatgacaaatacttcaaggatgagattgttcacttcaac
gtctcggaggagaaagccgtggtggacgcctcacacagggcccagcttatcccactgctt
atgagggttctgtttggccggatgcgcagtaagaccggcagtaagttccagggcaagtct
ggcgctgtgcagcgttcctccatcgtgctgaggttcctggcaggatgccagtctgaggag
ctgggcatgttcattgacctcctgctggagcccgtctgccaccacggacaaggtctgtgt
ttagctgcagtagacaaggcgatagcagagacagactcctctgccgtccttcctctgggg
aggcagcacagcctgctgaacatagtcaacacagtcatcagtaaactgggccacctcatc
cacacacacctgcccaaggtgctgcagatcctactgtgtgtcaccgcctccatctccacc
atcctcaaccagagagaacagttaaaggcaggctgtatcgctcctctgaagaacctgagg
cgcctgggggtcctgaggatccaggacttctttgatggcttcgactcgtacagcttcacc
ccagacgagctagacgctgtcttccaggctatcgtctggccccaggtctgccgtctgccc
acagagagcccctactcccccacccccctcctcaaactcatccacgtctggagcaagaac
gccaggtacttccccctcctggccaagcagcagtctggtcacccggagtgtgacgtcctc
ctcaacgtgttcgccctgctctccgccaagaacgtctctacccagactgttgccatggtg
atggacatcgccgagtccttggtgaccacgaaggaccttctggttacggagggtgaggag
gcggagctgagcgttaacggcagtgtgttcccccagccaccagagggagcttacatttct
gaagagcatctgacccagggtgccaggctgctcctgccccacatctccaccctgctacag
tacctcagtggcatcgtacgcaactctgacaggctcaagaagaagaagtttagatcccag
gtggccaaggagctcaacatcctctcaaagatcagcaggtttgtgagtgataaggaccag
agctcagtgctcatcagtctgctgctgccatacctccagaaggcccgcaacccacaggag
acagagattgacatcctggctacagtccagaacctgctgagacagtgttctgatccctcc
tccttcctcaagcctatcagtagactgttctccatcctccataacaagctgcccagacag
gccctcacctccctcttccagactctggcagacctggatagtggactgaagtacatcaca
gatacagctgctaagttgaatgcgtttgacagtcgtcacctggacgaggtctactttgac
gtgcgtctcacagccttccaggaggccaccaggaggatcaacgacatggacacgctggac
atgaacttcatctacaccatcatgcacaactgcttcgcctccttcgagattggagacatg
tccctggcagacaacgccaccttgtgtctgtctgctgtccttacacgtctggctgcagtg
ggccgtggagaggaggagtacaaggagatagtacagtacaccatactggacgctgtcagg
aaaggactgaggagcaagactgagagtgtgcagcatggctacaccacagtgctggcgtgt
ctggtgaagaccttccccacccgtagagacttcagagatctggtgcagctcaccgactac
aacgaccctgagtcggacttctttgaacacatgaagcacatccagatccatcgtagaggt
cgcgctctgaggaagttcgccaagcagctgacggagggtacggttgtgatgtcatcacgt
tccctccagaactttatcatgccctacgccatgactgccctcttcgacgagaagatgctc
aagaatgagggtatgacgtcagcctcagtagaagtggtaggagctgtgtgtaggagactg
acctggtctaaatacctctactaccttaaacactttgttcacatactgcacactggacag
gctgaacagaaactggctgtcagtctattggtgactgttctggaggcgttccactttgac
catgacactctggagagagaaatggaggcagctaagatcagggccaaagaggttgtgagc
accgtcgttgatgaagaaggtgatgaggaagaggaggtggcagctgtcgaatcagaggag
agtgacaccgaggaagccatggaaactgaaaccatcaacagcgacacgaaaacaaccacc
atagaaacagccaaggttgttactatggaaacggacgctgctgagaccgttgagggtgtt
gctatggaaacgaatgccacagaatctacagcggagcctaaaactgttccggtgaagaag
ccgaccccctccgctacagcccctgcagctcccagtggattaccccagaacaaagcagag
ctggaggctctgatcacctctatccatgccactgttcaaaatgctgtgctgcccaggcta
cacaagtgtctcaccgccaaggtgaagcgagacgaggagtgcaaggcagtaaagtctaag
gatgtgaaggaggaggaggtggccagagttcctatagccttcgccatggtcaaactgatg
cagacactacccacgaccgtcatggacgtcaacctgcctggcatcctgatgaagatgtgt
gtgctgctgaggaatcgtttccaggagatcagagacgtggctcgtaacaccctgattaag
ataatcgagactctgggggtcaaatacttgcagtacctactaaaggagatgaagtccatt
ctggttaagggctaccaggtccatgtgttgacattcacagtgtaccagctcctgtctcac
ctcgttcctatactgaaacctggagacctggaccactgcatgggcctgctaatagatatc
ttcaacaacgagctgtttggtgcagtggctgaggagaaggaggtgaaggggatagtctct
aagctgatggaggctcgccacagtaagagtatggactcctatgagttcctgggccagtac
tctggcaaggacagagtcatacaactcatactgccaatgaaagatatcctggagaacaca
gccaatctgaagacagcccgtcgtgcccatgcagtgttgaagaggatagtgtcagggcta
ctggtgaaccaggccatggaccatcaggctatactactgctcagccacggcctggtctca
gagagtctgcccctcgtcaccaagaggaacaaggacaaaaagccccaggcccccccggac
cctcgcctgccccctcccagctgtctcctcttgccccccaccccaaagagagggggactg
aaagcccccgtcagcagccgcaccaacatgcacatcctagtggacactggactcaggctg
ctccatatgagtctgaagaagtccaaggtgaactcctctgaggcctctgctcttgagatg
ctggatcccttctttgctctgctactagactgtctcaactccatgcacgtcaaggtgata
acagaggctctcttagcctttacattcctgttgcggttccccctgccagctgtagagcag
agtgcaggccagctcactaagcagctgtttgtcctgctcaaagactactccaaggctggc
gctgcccgcggagagaacttccaactcgtccagaactgcttcaagtccattaccatccta
gtaaagaacatgaagacacacaagataactgagacgcagctgcaagtgctgctgggatac
gctgaggaggacatttatgaccaatcacgtcaggcgacagccttcgggctgttaaaggca
atcctgtccaggaagctggtagtaccagagatggaggagctgatgaagaaagttgccaag
ctgtctgttaacgggcagaacggcatgatcagggtccagtgcagacatatttaccagaag
tatatcctggattatcctctggggaagaaactgagatcacatctggactttatcgtggcc
cagctcagctatgagtttgacacaggaagagaggctgctctggagatgatggcctatatc
ttccagaccttccctcagaacctgctgctgcagcacagtgggttgttctttgtccctatg
gctctggccatggtgaacgatgactcggctcgctgtaagaagatggccgcagtggccatc
aaatcactgctgagtcaactggaccaggaacaccagaacaccctgttcaccctggtcaac
acttggctgtctgcagacaaggtgtctctgcgtcgtctcggggcccaggtgtgtgggctg
tttgtggaggtagagggggttcagtttggccgtcgtctagatgccctgctacccctcatc
gagaaagagatccaccccgacaactttgaagacattgaggaggagcaggatgagaaagca
gcagacagactgctgttcagctacctgaccctggtcaccaaactcaccaaggactgtagc
ctactggagctcagcaagccgcaagacacactcaccaacatcctgggtcatgttgagacc
cacctgcgctaccctcactgttgggtgtggctgaccgcctctcaactgtttggtcagctg
tttgctgcccaccggccagaccagctggttgcccgctggagagaggagaccacagagaag
ggcagtgccaacaacaccacaccagaaccagtggcgaccacattccttaccaccaacctg
gacaagaagatgagagagttggtcctgtctttctgtcaccagctccagtcgaagtacctg
gacacgtcaacaggagaacaggtgatcaagaacctgctgttcgtcgccaaagtgatctac
ctgatctcacctgagtctgaaatcacacctgcccaggaagtagaggagggaggggaggag
gaagagatgaaggagaatgatgaaggagagaaagatggagaagatgaggaaggggatgaa
gaagagaaacaggaagaggaggaagaggatgagaaggatgatcgtcctccatccttactg
tggatgatgaagaagctgtctctaatggctaagagagaagctgcagacacgcccaagata
cccctcaagagaacatgtgtatttaagttcctgggggccatagctgtggaccttggtaaa
gacaggctgggtccttacctcaccaccatcatcgcccctctctacagagaactggacagc
acctatgcagaccaagatcccaccctgaaaaacctgtcccaggagctgatagagcttttg
aaaaagcaggtggggctgcagatcttctccctggccttctcagccgtccagaaggatgcc
tcacagaggagggccaaccgcaagaaacacaaggctatgcaggcggtggctaaccctgac
atcgcagccaggaagaagctgaagaaacacaagaacaagatcgaggccaagaagaggaag
attgagttcctgaggcctggctacaaagccaagagacagaggaactcgctcaaggacttg
gctatggtgaaatga
DBGET
integrated database retrieval system
