Coregonus clupeaformis (lake whitefish): 121543700
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Entry
121543700 CDS
T08357
Name
(RefSeq) laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121543700
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121543700
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
UPF0242
FRP
Motif
Other DBs
NCBI-GeneID:
121543700
NCBI-ProteinID:
XP_041709772
LinkDB
All DBs
Position
28:35378384..35422134
Genome browser
AA seq
1637 aa
AA seq
DB search
MLILHIASLLTLGWRSFAQLPEFGDVCTEGSCYPATGDLLIGRAHQLTASSTCGIEKPER
FCIVGHLEEEKKCFVCDSREMYDERMNHTTSHSIENLVTTFAPNRLKTWWQSENGVENVT
IQLNLEAEFHFTHLIMTFKTFRPATMVIERSMDFGKKWQVYRYYSYDCESAFPGISVGPL
VKVDDVICDSRYSDIEPSTEGEVIFRVLDPAFEIEDPYSPRIQNMLKITNLRVQFTKLHT
LGDNLLDSRDEVTEKYYYSLFDMVVRGNCFCYGHASKCAPVDGIHVSTEGMVHGRCMCNH
NTEGLNCEHCKDLYNDLPWRPAEGRNTNACKMCECNYHSRSCHFDMAVYLSMGNVSGGVC
NECQHNTMGRQCEQCRPFYYQHPERHLRDPNICEPCSCDPAGSLQGGVCDDRTDVSAGLI
AGQCRCKASVEGERCDHCRQGHYGLGQGPNGCLQCTCNPLGTLPGGSPCDMDTGNCFCKR
LVTGRNCDQCLPQHWGLSNDMDGCRSCDCDQGGAVNNDCSPISGQCQCRGHMYGRRCDQV
ESGFYFIALDHYTYEAEDAKHGRGVTVVPRPYPLDRSPTWTGPGFVNVPEGAHLEFHINN
IPDSMDYDMLIRYEPQFPEQWEQVEIRVMRPYSKRVGQPFSPCENTLPGGDQQLVSLPPG
SRHVVLPRPVCLEKGRNYTMHLSLPLYSSLSDVQSPYTLIDSLVLIPRVRELELFEGSQG
EGAWDTFQRYRCLESSQSVIKSPMTDICNDYIFSVSALLHQGAMACQCDSQGSLSAVCDP
SGGQCQCRPNVAGRNCDRCAPATFLFSPSGCRPCECSPTGSVNAFCHEATGQCECVPGAS
GRQCAHCLPGYWGFPQCRPCQCNGNSDYCHPQTGECQGCRAFTTGHMCERCLGGYHGDPV
LGLGGNCRPCMCPDGPGSGRQYADGCYQTANNYQLVCVCSPGYRGARCDECAPGHYGNPQ
VPSGRCLPCQCNDNIDQLDPGSCDARTGVCLKCLHHTEGYGCQRCKLGYYGNAATQSCSR
CMCYSVGTTSEVCPSPGECHCDLQTGQCPCRPNVIGQNCDRCAPDTFNIGSGKGCQTCDC
DPTHSFGTSCNELSGQCSCRPGFGGRKCNECRDMFWGDPEVKCQACNCDLRGIASEQCHR
SSGQCVCVEGVSGPRCNQCARGYHGEFPACERCHRCFAEWDRVVGELTNQTQRLKDHVTE
LQTNGVTAPYKDTVSSLEISANAISAIVENNPAIQRMEDVQQMLQQATELVADLNERLNV
SEDSLSRLVANANDTKASMDTLREQARELERTVKDMRDHIKTVKNSNIEGAMDTITEAHL
ESKRAEIRANQTTSYPDNTLEQSATLRREAEARLSQNQAEFDLRQQKHTERLERLAMELD
TLDLSELSKQTCGVAGGEEGCAASPCGGVGCVSDDGTNRCGGEGCDGLVTQTQSALKTAK
DLDQEILSTMQEVDKLSRMVWEVKVRADEAKLSAQEVLLKSNQSRDRVEHSNEQLRSLIK
EIRDLLTNDRANVEVIEAVSNEVLALEMPTSPGQLEALTQEIRDRVGTLTRVEDILSQSA
NDIHTAKRLLEQARTASQEASEMKATAALVKEALETTEHAQNAAIDAVKQAHNNTRGTLD
LITSVESETGGVGAASE
NT seq
4914 nt
NT seq
+upstream
nt +downstream
nt
atgttgatattacatatcgcatcacttttgaccctcgggtggcgctcctttgcgcagctg
ccggagtttggggatgtgtgcactgaggggagctgctaccccgccaccggggaccttctg
atcggccgcgcacaccagctcaccgcctcatccacttgcggcattgagaagcctgagcgc
ttttgcatcgttggtcacctggaggaggagaagaagtgttttgtgtgtgactccagggag
atgtatgatgagaggatgaaccacaccaccagccacagcatcgaaaacttggtcaccacc
ttcgcccccaaccgcctcaagacctggtggcagtctgagaatggtgtggagaatgtgacc
attcaactgaacctggaagctgagttccacttcacgcatctcatcatgacctttaagacg
ttccgtccggctaccatggtgatcgagcgttccatggattttggaaagaagtggcaagtg
taccgttactatagctacgactgtgagtccgccttccctgggatatccgtgggaccattg
gtcaaagtggacgacgtcatctgtgactcccgctactctgacatagagccatccacagag
ggagaggtgatattcagggtgctggacccagcgtttgagattgaagacccttacagtccc
aggatacagaacatgctgaagatcactaacctgcgtgtccagtttactaagctccacaca
ctgggtgacaacctgctggactccagagacgaggtcacagagaaatactactactccctc
ttcgacatggtcgtccgcggcaactgcttctgctacggacatgcctccaaatgtgcccct
gtagatgggatacatgtaagcacagagggcatggtccatggtcgctgtatgtgtaaccac
aacacagagggtctgaactgtgagcactgtaaggacttatacaacgacctgccctggagg
cctgcagagggacgcaacaccaatgcctgcaagatgtgcgagtgtaactaccactccagg
tcatgtcactttgacatggctgtgtatctgtctatggggaacgtgagtggaggagtgtgt
aatgagtgtcaacacaacaccatggggcgtcagtgtgagcagtgcagacccttctactac
cagcaccccgaaagacacttgagagaccccaacatctgtgaaccgtgtagctgtgacccg
gcgggctccctgcagggtggtgtgtgtgacgacaggacagacgtgtctgctggtctgata
gcaggacagtgtcgctgtaaggccagtgtggagggagagcgctgcgaccactgtagacag
ggacactacggcctgggacagggaccaaacggctgcctgcagtgtacctgtaaccccctg
ggtacgctgcctggaggaagcccatgtgacatggacacaggaaactgcttctgcaaacgc
cttgtcaccggcaggaactgtgaccagtgtctgccgcaacactgggggctgagtaatgac
atggacggctgcagatcatgtgactgcgaccagggcggagccgttaataatgattgttct
ccaatatcaggccagtgtcagtgtagaggacacatgtatgggaggcgttgtgaccaggtg
gagtcaggattctacttcatcgccctggaccactacacctatgaggctgaggacgccaag
cacggccgtggtgtgacagtggttcccaggccttatcctctggaccgtagtcctacctgg
acagggccagggtttgtcaatgtacctgagggagcccacctggagttccacatcaacaac
atacctgactccatggactacgacatgctgatccgctatgaaccacagttcccggagcag
tgggaacaggtggagatcagagtgatgcgtccttactcaaagagagtgggacagccattc
agtccatgtgaaaacacgctaccaggaggagatcagcagttggtgtctcttcctccagga
tccagacatgtggtgctcccgaggcctgtgtgtctggagaaggggcggaactacaccatg
catctcagtctacctctctactcctctctcagtgacgtccaaagcccatacacactcatc
gactctttggtgctgattccgcgggtgcgtgagctggagttgtttgagggttctcagggc
gagggggcgtgggatacgttccagaggtaccgctgtctggagagcagccagagcgtcatc
aagagccccatgacagacatctgtaacgactacatcttcagcgtgtctgccctgctacac
cagggggctatggcgtgccagtgtgactcccagggctctctcagtgcggtgtgcgacccc
agcggcgggcagtgccagtgtcggcccaacgtggcgggcaggaactgtgaccgctgtgcc
cccgccaccttcctgttcagcccctcaggatgcagaccctgtgagtgtagtcctacgggc
tctgtgaacgctttctgccacgaggccacaggtcagtgtgagtgtgtaccaggggcgtcg
gggcgtcagtgtgcccactgcctgccaggctactggggcttccctcaatgccggccctgc
cagtgcaacggcaacagcgactactgccaccctcagactggggagtgccagggctgccga
gccttcaccaccggacacatgtgtgaaaggtgtctgggtggttaccatggcgacccagtg
ttgggtttggggggtaactgccgcccgtgcatgtgtcccgacgggccagggagcggacgc
cagtacgcagacggctgctaccagaccgctaacaactaccagttggtctgtgtctgcagc
cctggatacagaggagccaggtgtgatgagtgtgccccaggtcactatggtaacccccag
gtgcccagcgggcgctgtctgccctgccagtgtaacgacaacatcgaccagctggaccca
gggtcctgcgacgctcgtacgggcgtctgcctcaaatgcctgcaccataccgagggctat
ggctgccagcgctgcaaactgggttactacggcaacgccgccacccagagctgcagtagg
tgtatgtgttattcagtgggcacgacgtcggaggtgtgtccgtccccgggggagtgtcac
tgtgacctgcagactggccagtgtccctgccggcctaacgtgattggccagaattgcgac
cgctgtgcccctgatacgtttaacataggaagcggaaagggctgccagacctgtgactgt
gacccaacccactcctttgggacgtcgtgcaacgagctgtcggggcagtgctcatgcagg
ccaggtttcgggggaagaaaatgcaacgagtgccgagatatgttctggggagatcctgag
gtcaaatgtcaagcgtgtaactgtgacctgcgtggcatcgccagcgagcagtgccaccgt
tcgtccggccagtgtgtgtgtgtggagggtgtgtctgggcccaggtgtaaccaatgtgcc
agggggtaccatggggagttccctgcctgcgaacgatgccaccggtgcttcgccgagtgg
gaccgcgtggtaggggaactgaccaatcagacgcagcgtttgaaagatcatgtgacagag
ctccagaccaatggggtgacggcaccatacaaagacaccgttagcagtctggagattagt
gctaatgctatcagtgcgatagtagagaacaaccctgctatacagaggatggaagatgta
caacagatgttgcagcaggccactgagctggtggcagacctgaacgagaggctgaacgtc
tcagaggattccctgtcccgtctcgttgccaatgccaacgacaccaaggccagtatggac
acactgagagagcaagcccgagagctggagagaacagtcaaagacatgagagaccacata
aagactgtgaagaactctaacatagagggagcgatggacaccatcaccgaggcccacttg
gagtctaagagggcggagatccgtgccaatcagaccaccagttaccccgacaacactttg
gaacagtcggctacactacggcgcgaagcggaggccagactgagccagaaccaggcagag
tttgacctgagacaacagaaacacacagagagactggagcggctcgccatggagctcgac
actcttgacctatcagagctcagcaagcagacatgtggagtggctggaggggaggagggg
tgtgctgcgtccccctgtggaggggtggggtgtgtgtcagatgatggcaccaatcgctgt
ggtggagaggggtgtgacggtctggtcacacagacacaaagcgctctgaaaacagccaag
gacctcgaccaggaaatcctgtccaccatgcaggaagtggacaagctctctaggatggtg
tgggaggtgaaggtgcgtgcagacgaggccaagctgagtgctcaggaggtgctgctgaag
tccaaccagagccgagatagagtggagcacagcaacgagcagctccgcagcctcatcaag
gagatacgagacctactcactaacgaccgtgccaacgtggaggttatcgaagcagtgtca
aacgaggtgttggccctggaaatgcccacgtcgcccgggcagctggaggccctgacccag
gagatcagagacagggtgggaaccctcaccagagtggaggacatcctcagtcagagtgcc
aacgacatacacactgcaaagaggctgctggagcaggcccgcaccgccagtcaggaggcg
tctgagatgaaggcgacagctgccctggtgaaggaggctctggaaactactgagcacgct
caaaatgctgccatcgacgccgtcaaacaggcccacaacaacaccaggggaacacttgac
ctcatcacctctgtggagtcggagacgggcggagtcggagctgcgtctgagtaa
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