Coregonus clupeaformis (lake whitefish): 121543859
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Entry
121543859 CDS
T08357
Name
(RefSeq) collagen alpha-1(XXVIII) chain-like
KO
K23619
collagen type XXVIII alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cclu01002
]
121543859
Peptidases and inhibitors [BR:
cclu01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
121543859
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Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_3
VWA_CoxE
VWA_4
Motif
Other DBs
NCBI-GeneID:
121543859
NCBI-ProteinID:
XP_045064638
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All DBs
Position
28:complement(20411113..20425317)
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AA seq
1180 aa
AA seq
DB search
MGKGVALFLLLLAVLHEARGQRRRKGKYSVLRDGGNDMATCSMEVAFILDSSEGAKTFLF
EKQKSFVLHFSTRLTMLQVSGWTLRLRMAALQYSSSVSVEHSFTAWQDLDVFHSRVSSMA
YIGHGTYSTYAITNATQLFTQETKEDSVRVAVLMTDGADHPRNPDVIGAAAEAKGSGVKL
FSVGLSDLARQNSAKLRAIASTPAQQFVHSLTDPQLEEKLLKWLGAVALEACPQAKVCLC
ERGERGPPGNPGKKGDPGYEGPSGPKGSRGEPGVSGRPGSEGLEGSPGYKGDKGEIGDCG
TPGEKGDEGPGGPPGPRGPRGDQGVNGPPGDQGPEGQTGPKGDQGPTGASGPAGEIGIGF
PGPKGAKGIQGRPGPLGPIGIGEPGQPGPPGLAGAQGNQGAVGEGLPGPKGDRGYEGPRG
ERGLTGVGVKGDKGNPGQLGSQGPVGMPGAGIQGEKGNQGPVGPPGPRGNPGVGLIGQKG
SQGFSGEPGIPGERGVGEPGPKGDPGSEGLPGIPGLSGEDGAIGQKGDIGSQGPRGPDGA
PGKGVPGEKGDRGERGSRGQLGAVGPVGTMGAKGEPGSPGRAGTNGPPGRGLPGIKGDPG
AVGPPGHVGEPGIGITGPKGERGLPGPIGPPGLEGEGLPGTPGPPGIPGLAGEIGPEGKG
LPGPKGDRGTPGPTGPAGAPGVGLMGPKGSAGQIGAPGPQGLPGEGIQGPKGESGFQGIT
GPRGPPGQGIQGNKGDRGFVGELGRTGDKGETGETGAAGPLGRLGEKGEPGLTREEVIKL
VRSICGCGVKCRESPLELVFVIDSSESVGPDNFNVVKDFVNALVDRASVSQETTRVGVVL
YSHINMVVVSLHQQASRDQVKRAVRTMTYLGEGTFTGSAIHQANQVFRAARPGVRKVAIV
ITDGQADERDSVRLEEAVKEANGSNIETFVIGVVNQSDPLYEEFKKELHLMASDPDREHV
YLIDDFRTLPALESKLLSRICESNGGAQFSSIPSSRYSPRTPGQAGIVRETPERTDTDTP
TFNGDFKKTQMVPGPPGESDRVFLPQGPQTGDQDISETYRVPSFDREPFKRLPEFLLPSE
VKNPTHSVVMTGTQAPTQRPLPVVKLPRLPPTSLPLPQDALIPDERCGQILDPGPCWDYV
VKWYYDTTANACAQFWFGGCQGNQNQFESEKSCKKTCVKV
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggggaaaggcgtggcactgttccttttactgttggcagttctacatgaggccagaggc
cagagaagaagaaaaggaaagtacagcgtcctcagagatggaggaaatgacatggcaaca
tgctccatggaggtggccttcattctggacagctcggagggtgccaagaccttcctgttc
gagaagcagaagtcctttgttctgcatttcagcactcgtctcaccatgctccaggtgtct
ggatggacactgaggctgcggatggctgctctgcagtacagcagctccgtgtctgtagag
cacagctttactgcctggcaggacctggatgtgttccacagcagagtcagctccatggcc
tacattggccacggcacctactccacctacgccatcaccaacgccacacagctcttcacc
caggagaccaaggaggacagcgtcagggtggcggtgctcatgactgacggtgctgatcat
ccgaggaaccctgatgtgatcggagcagcggcagaggctaagggtagtggcgtgaagctc
ttttctgtagggttgtcggacctagcccgccagaacagtgccaagctccgggctatcgcc
agcacgccggcccagcagttcgtccacagtctcactgacccccagctagaggagaagtta
ctgaaatggttgggtgcagtagcgcttgaggcgtgtccacaggctaaagtgtgtttgtgt
gaaagaggggagagaggccctcctggaaacccaggtaaaaaaggagatccaggatatgaa
ggaccatctggtccaaaaggatcaaggggagaacctggagtcagtggccgaccaggaagt
gaaggtcttgagggcagtcctggttataaaggtgacaagggggagataggagactgtggc
actcctggggaaaaaggagatgaaggccctggaggacctcctggcccacggggacccaga
ggagaccagggtgttaacggaccacctggggaccagggtccggagggccaaacaggacct
aaaggggaccaaggacccaccggtgcatctggaccagcaggtgaaattggcattgggttc
ccaggtccaaagggggccaaaggaattcagggaagaccaggaccccttggtcccattgga
ataggagagccaggacagccaggacccccaggacttgctggagcacagggtaaccaggga
gctgttggggaggggctccctggcccaaagggggatcgaggctacgagggccccagaggt
gagcgtggtctcacaggtgttggggtcaaaggtgataagggaaatcctgggcagcttggt
tcacaaggaccggtgggaatgccaggggcagggattcaaggagaaaaggggaaccaaggg
ccagttggccctccaggccccagagggaatccaggtgtgggacttattggccaaaaggga
agccaaggcttctcaggtgaacctggaatcccaggggagagaggtgttggggagccagga
cctaaaggagacccaggatcggaggggttacctggtattccgggcctctctggagaggat
ggggccataggacagaagggtgacattggttcacaggggcccaggggacctgatggggca
cccggaaaaggtgtccctggagaaaagggggaccgaggggagcggggctccagaggccag
ctaggagcagtagggcctgtggggacaatgggggccaagggtgaaccaggaagtcctgga
cgagcaggtacaaatggaccacctgggcggggtttacccggtatcaagggggatcctggt
gcagtaggcccacccggacatgtcggtgaaccaggaatagggatcactggacctaagggt
gagagagggctaccagggcccattggtccacctgggcttgaaggggaaggccttcctgga
actccaggaccccctgggataccaggactggcaggcgagattggaccagaaggaaaaggt
ttacctggtcctaagggagaccggggaactccaggccccacaggaccagctggagcacca
ggagtcgggctaatgggtcccaaggggtctgctggtcagattggagcaccgggtccccag
ggactgcctggagagggcattcaaggaccaaagggggagtcaggattccaggggatcacg
ggccccagggggcccccaggacagggtattcaagggaataagggtgacagggggtttgtg
ggtgaactaggcagaacgggggacaagggagagactggagagacaggagcggctggacct
ttgggcagactgggagaaaaaggggaacctggcctaacaagagaggaggtcatcaaactg
gtcagatctatatgtggttgtggggtgaagtgccgtgagagcccactggagttggtcttt
gtgattgacagctcagagagcgtgggccccgacaacttcaatgtggtcaaggactttgtg
aacgctctggtcgaccgcgcctccgtgagccaagagaccactcgcgtcggggtggttctc
tacagccacatcaacatggtggtggtcagtctgcaccagcaggccagccgggaccaggtg
aagagggcggtccgcactatgacctacctgggcgagggcaccttcacaggcagcgccatc
catcaggccaaccaggtgttccgggcggccaggcccggggtgaggaaagtggccatagtg
atcacagatggacaggcggacgagagggactctgtgaggctggaggaggcggtgaaagag
gccaatggcagtaacattgagacgtttgttatcggggtggtgaaccagagtgatccgctg
tatgaggagtttaagaaagagctccacctcatggcctctgacccagacagggaacatgtc
tacctgattgatgacttcaggacacttcctgcccttgagagcaagctgctgagtcggatc
tgtgagagtaatggcggggcccagttcagctccatccccagctccagatactcccccaga
acccctggacaagccgggattgtaagggaaaccccagagaggactgatactgacacgccc
actttcaatggagacttcaagaaaacacagatggtgccaggtccaccaggagagtcagac
agagtctttctcccacagggcccccagacaggggaccaagatatctcagagacctacagg
gtcccatcctttgacagggaacccttcaagcgcctaccagagttccttcttccatcagag
gtgaagaatcccacccacagtgtggtcatgacgggcacccaggcccccactcagaggccc
cttcccgtagtaaagctacccaggctccccccaacctctctacctctgccccaggatgct
ttaataccagatgagagatgtggacagattctggaccccgggccttgctgggattacgtt
gtgaagtggtactatgacactacggcgaatgcctgtgcccagttctggttcggaggctgt
caggggaaccaaaaccagtttgagtcggagaagagctgcaaaaaaacctgtgtgaaggtc
taa
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