KEGG   Coregonus clupeaformis (lake whitefish): 121543887
Entry
121543887         CDS       T08357                                 
Name
(RefSeq) nibrin-like isoform X1
  KO
K10867  nibrin
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03440  Homologous recombination
cclu04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    121543887
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    121543887
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cclu03032]
    121543887
   03400 DNA repair and recombination proteins [BR:cclu03400]
    121543887
DNA replication proteins [BR:cclu03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    121543887
DNA repair and recombination proteins [BR:cclu03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     121543887
    BRCA1-C complex
     121543887
SSDB
Motif
Pfam: Nbs1_C NIBRIN_BRCT_II FHA Yop-YscD_cpl BRCT RTT107_BRCT_5 PTCB-BRCT Tropomodulin
Other DBs
NCBI-GeneID: 121543887
NCBI-ProteinID: XP_045081936
LinkDB
Position
17:1726314..1739024
AA seq 852 aa
MWTLKPLESGAVTHYLLPGKEYVVGRKNCEVILPNDQSISRAHAHLTATDQTLTLKDCSK
YGTFVNEERLSGDTPRSLTAGDRVTFGVFHSKFSVQQVTVVVCSSCVDNEGKISLSQALQ
PLGGRLANTWTQDCTHLVMPTVKVTIKTICALLCCRPIVKQEFFTELTKALQQKQPPPKA
ESFFPEIDEPSLNKDEVDLTERPERKELFTDKTFLFLNAKQQKRLSLAVSCGGGRSQLLE
EGSVPVSLLESPLSCVINMATGNSQALVPPSTKKWADSVGRILQRKGLRFITESEIGLAA
IYVSCDKYCNPSNQMADSESMRMKPTIPGATLSQNAPVDETVLPAASQNITAYAVNTEPS
QGISGVDVAGVSAVGETPERDQSRTTSHLDRPKCSSGRELAGTCTVAETMMSSFSASDSA
GGGGSDRKKGEIQHPGGGKGDAITRFLATAPRTNGGVQTMSTQKCSSQKQQVSQKGSPQK
QSALTSFFQPVGKKRPREGKESPTVQSEAKLSRREEEEEKRKRTEPQHTETSNTTHTRAP
SNTTTHTPSATTHTRATTHTPTGRSQGQQSSGAGQTEALSEGVSHPAQQGLQSRKRKEME
EETKGGGASEIEMDELESIMSEDMDESDEPMSASQGQRSKLTDKSSIDRKQLLKTVELTS
ANKKQRVDPVEPITAYHGSSLDSEEGSSANKRQRAEPVAEVKEEEVSFIEAKPVSGVAPG
HLEKPETDTKPSKPAKQKASGSGGENLPSRLLVVEFKSLTGATLARPKPRPTETHSNVNR
KDFKRFRKVPVPGAQGLPNIIGGSDLLAHNRGKNSELEEWLRDAAEDERQSKKEETLGDD
LFRYNPKPTKKR
NT seq 2559 nt   +upstreamnt  +downstreamnt
atgtggacactgaaacctttagaatccggagctgtcacccactacctcctgccaggtaag
gagtatgtggtggggcgtaagaactgtgaggtcatcctgcccaatgaccagtccatcagc
cgggctcatgctcaccttaccgctacagaccagaccctgaccctgaaggactgctctaag
tatgggacatttgttaacgaggagcgtctgtcaggtgacacccctcgcagcctaacggca
ggggacagagtgacatttggggtcttccacagcaagttcagtgtgcagcaggtaacggtg
gtggtgtgttcatcctgtgtggataatgaagggaagatctctctgtctcaggccctgcag
cctctgggtggccgactggccaacacctggacacaggactgcactcacctggtcatgccc
actgttaaagtcaccatcaagactatctgtgcgttgctgtgctgtcggcccatagtcaag
caggagtttttcactgagctcaccaaagccctgcaacagaaacaaccacctccaaaagct
gagagtttcttcccagagatagacgagcccagtctgaataaggatgaggtggacctgaca
gagaggccagaacgtaaagaacttttcactgacaagaccttcctcttcctcaatgccaaa
cagcaaaagcgtctgagtttggcagtgagttgcggaggtgggaggagccagctcctggag
gaggggtctgtccctgtgtcactcctggagtcgcctttgagctgtgtgatcaacatggca
acgggaaactcccaagcactagtgcccccctccactaagaagtgggcagactctgtgggg
aggattctacagaggaaaggtcttcggttcatcacagagtctgagatcggattggctgcc
atctatgtcagctgtgacaagtactgtaatccctccaatcagatggctgactcagaatcc
atgagaatgaaacccaccatccccggtgccacgctatcccagaatgcaccagtggacgag
acggtgctgccagcggcgtctcagaacatcacagcctatgctgtaaacaccgagccctca
cagggcatcagtggggtggatgtggctggggtgagtgcagttggagagacccctgagagg
gaccagagccggacaacctctcatcttgaccgacccaaatgctcctcaggcagagagctg
gccgggacctgcacagtggcagagactatgatgtcatcattcagcgcctcagacagcgct
ggtggtggcggctcagacagaaaaaaaggagagatacaacacccaggtggagggaaaggt
gatgctatcaccagattcctagccactgcccctcggaccaacgggggagtgcagacgatg
tccacacaaaagtgctcctcccagaaacaacaggtctcgcagaaaggttccccccagaaa
cagtctgccctcacaagtttcttccagcctgtcggcaagaaaagacctcgggaaggcaag
gagtcccctactgtccaatcagaggccaagctctccaggagggaagaggaggaggagaag
aggaagaggacagaaccacagcacacggagacctccaacaccacacacacacgtgcgccc
tcaaacaccaccacacacactccttctgccacgacacacacacgggctaccacacacacc
cccacaggcaggtcccagggccaacagagctcaggagcaggtcagactgaggctctgtca
gagggggtctcccaccctgcccagcaggggctccaatccaggaagaggaaagagatggag
gaggagacgaaagggggtggggcttcagagatagagatggacgaactggagtccatcatg
tctgaggacatggacgaatcagatgagcccatgtcagccagtcaaggccagaggtcgaag
ctgacggacaagagctcaatcgatagaaaacagctcctaaagacagtggaacttacctct
gccaataagaaacagcgggttgatccagtggaaccaatcacagcctatcatgggtcaagc
ttggattcagaagagggctcgtcagccaataaaagacagcgagcggagcctgtagctgag
gtcaaagaggaagaggtgtctttcattgaggcaaaaccagttagtggtgtggcccctggt
catctggaaaagccggagactgataccaaaccctccaaacctgccaaacaaaaagcctca
ggttcagggggtgagaatctccccagcagacttctagtagtggagttcaaatccctcacc
ggggcaacactggccagacctaaaccacgccccacggagacgcacagcaacgtcaacagg
aaggacttcaaacgcttccgtaaggtcccagtgcccggtgcccagggtttgcccaacatc
atcggagggtcagacctgttggcccacaaccggggcaagaactctgagctggaggagtgg
ctgagagacgcagcagaggatgagcgtcagagcaagaaagaggagactttgggagatgac
ctcttcaggtacaaccccaaacccaccaagaaaagatga

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