Coregonus clupeaformis (lake whitefish): 121543887
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Entry
121543887 CDS
T08357
Name
(RefSeq) nibrin-like isoform X1
KO
K10867
nibrin
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03440
Homologous recombination
cclu04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121543887
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
121543887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cclu03032
]
121543887
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121543887
DNA replication proteins [BR:
cclu03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
121543887
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
121543887
BRCA1-C complex
121543887
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nbs1_C
NIBRIN_BRCT_II
FHA
Yop-YscD_cpl
BRCT
RTT107_BRCT_5
PTCB-BRCT
Tropomodulin
Motif
Other DBs
NCBI-GeneID:
121543887
NCBI-ProteinID:
XP_045081936
LinkDB
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Position
17:1726314..1739024
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AA seq
852 aa
AA seq
DB search
MWTLKPLESGAVTHYLLPGKEYVVGRKNCEVILPNDQSISRAHAHLTATDQTLTLKDCSK
YGTFVNEERLSGDTPRSLTAGDRVTFGVFHSKFSVQQVTVVVCSSCVDNEGKISLSQALQ
PLGGRLANTWTQDCTHLVMPTVKVTIKTICALLCCRPIVKQEFFTELTKALQQKQPPPKA
ESFFPEIDEPSLNKDEVDLTERPERKELFTDKTFLFLNAKQQKRLSLAVSCGGGRSQLLE
EGSVPVSLLESPLSCVINMATGNSQALVPPSTKKWADSVGRILQRKGLRFITESEIGLAA
IYVSCDKYCNPSNQMADSESMRMKPTIPGATLSQNAPVDETVLPAASQNITAYAVNTEPS
QGISGVDVAGVSAVGETPERDQSRTTSHLDRPKCSSGRELAGTCTVAETMMSSFSASDSA
GGGGSDRKKGEIQHPGGGKGDAITRFLATAPRTNGGVQTMSTQKCSSQKQQVSQKGSPQK
QSALTSFFQPVGKKRPREGKESPTVQSEAKLSRREEEEEKRKRTEPQHTETSNTTHTRAP
SNTTTHTPSATTHTRATTHTPTGRSQGQQSSGAGQTEALSEGVSHPAQQGLQSRKRKEME
EETKGGGASEIEMDELESIMSEDMDESDEPMSASQGQRSKLTDKSSIDRKQLLKTVELTS
ANKKQRVDPVEPITAYHGSSLDSEEGSSANKRQRAEPVAEVKEEEVSFIEAKPVSGVAPG
HLEKPETDTKPSKPAKQKASGSGGENLPSRLLVVEFKSLTGATLARPKPRPTETHSNVNR
KDFKRFRKVPVPGAQGLPNIIGGSDLLAHNRGKNSELEEWLRDAAEDERQSKKEETLGDD
LFRYNPKPTKKR
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgtggacactgaaacctttagaatccggagctgtcacccactacctcctgccaggtaag
gagtatgtggtggggcgtaagaactgtgaggtcatcctgcccaatgaccagtccatcagc
cgggctcatgctcaccttaccgctacagaccagaccctgaccctgaaggactgctctaag
tatgggacatttgttaacgaggagcgtctgtcaggtgacacccctcgcagcctaacggca
ggggacagagtgacatttggggtcttccacagcaagttcagtgtgcagcaggtaacggtg
gtggtgtgttcatcctgtgtggataatgaagggaagatctctctgtctcaggccctgcag
cctctgggtggccgactggccaacacctggacacaggactgcactcacctggtcatgccc
actgttaaagtcaccatcaagactatctgtgcgttgctgtgctgtcggcccatagtcaag
caggagtttttcactgagctcaccaaagccctgcaacagaaacaaccacctccaaaagct
gagagtttcttcccagagatagacgagcccagtctgaataaggatgaggtggacctgaca
gagaggccagaacgtaaagaacttttcactgacaagaccttcctcttcctcaatgccaaa
cagcaaaagcgtctgagtttggcagtgagttgcggaggtgggaggagccagctcctggag
gaggggtctgtccctgtgtcactcctggagtcgcctttgagctgtgtgatcaacatggca
acgggaaactcccaagcactagtgcccccctccactaagaagtgggcagactctgtgggg
aggattctacagaggaaaggtcttcggttcatcacagagtctgagatcggattggctgcc
atctatgtcagctgtgacaagtactgtaatccctccaatcagatggctgactcagaatcc
atgagaatgaaacccaccatccccggtgccacgctatcccagaatgcaccagtggacgag
acggtgctgccagcggcgtctcagaacatcacagcctatgctgtaaacaccgagccctca
cagggcatcagtggggtggatgtggctggggtgagtgcagttggagagacccctgagagg
gaccagagccggacaacctctcatcttgaccgacccaaatgctcctcaggcagagagctg
gccgggacctgcacagtggcagagactatgatgtcatcattcagcgcctcagacagcgct
ggtggtggcggctcagacagaaaaaaaggagagatacaacacccaggtggagggaaaggt
gatgctatcaccagattcctagccactgcccctcggaccaacgggggagtgcagacgatg
tccacacaaaagtgctcctcccagaaacaacaggtctcgcagaaaggttccccccagaaa
cagtctgccctcacaagtttcttccagcctgtcggcaagaaaagacctcgggaaggcaag
gagtcccctactgtccaatcagaggccaagctctccaggagggaagaggaggaggagaag
aggaagaggacagaaccacagcacacggagacctccaacaccacacacacacgtgcgccc
tcaaacaccaccacacacactccttctgccacgacacacacacgggctaccacacacacc
cccacaggcaggtcccagggccaacagagctcaggagcaggtcagactgaggctctgtca
gagggggtctcccaccctgcccagcaggggctccaatccaggaagaggaaagagatggag
gaggagacgaaagggggtggggcttcagagatagagatggacgaactggagtccatcatg
tctgaggacatggacgaatcagatgagcccatgtcagccagtcaaggccagaggtcgaag
ctgacggacaagagctcaatcgatagaaaacagctcctaaagacagtggaacttacctct
gccaataagaaacagcgggttgatccagtggaaccaatcacagcctatcatgggtcaagc
ttggattcagaagagggctcgtcagccaataaaagacagcgagcggagcctgtagctgag
gtcaaagaggaagaggtgtctttcattgaggcaaaaccagttagtggtgtggcccctggt
catctggaaaagccggagactgataccaaaccctccaaacctgccaaacaaaaagcctca
ggttcagggggtgagaatctccccagcagacttctagtagtggagttcaaatccctcacc
ggggcaacactggccagacctaaaccacgccccacggagacgcacagcaacgtcaacagg
aaggacttcaaacgcttccgtaaggtcccagtgcccggtgcccagggtttgcccaacatc
atcggagggtcagacctgttggcccacaaccggggcaagaactctgagctggaggagtgg
ctgagagacgcagcagaggatgagcgtcagagcaagaaagaggagactttgggagatgac
ctcttcaggtacaaccccaaacccaccaagaaaagatga
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