Coregonus clupeaformis (lake whitefish): 121544252
Help
Entry
121544252 CDS
T08357
Name
(RefSeq) tubby-related protein 4-like isoform X1
KO
K24720
tubby-related protein 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
121544252
Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
Other domain-containing proteins
Tubby family proteins
121544252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR35_TULP_N
Tub
ANAPC4_WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_EML_2
Ribosomal_60s
Beta-prop_CAF1B_HIR1
Motif
Other DBs
NCBI-GeneID:
121544252
NCBI-ProteinID:
XP_045065026
LinkDB
All DBs
Position
29:complement(8560763..8571484)
Genome browser
AA seq
1921 aa
AA seq
DB search
MSRNCEPSHSVGMLAAVEHGPILCSDSNILCLSWKGRVPKSEKDKPVCRRRYYEEGWLAT
GNGRGVVGVTFTSSHCRRDRNTPQRINFNLRGHNSEVVLVRWNEPFQKLATCDMEGGIFV
WIQYEGRWSVELVNDRGAQVSDFTWSHDGTQALIAYRDGFVLVGSVSGQRHWSSEINLES
QITCGIWTPDDQQVLFGTADGQLIVMDCHGRMLAHVLLHESDGIVGMSWNCPCFLVEDST
ESDTDSDDNNPPQVRSLKPLLTVSFISGDISLMNNYDDLAPIVIRSGLKDVEVQWCSQGD
LLAVAGMERHGLPGVPSDSIMRNALVKFYNVQGEHIYTLETPAQRPITTICWGHRDSRLF
LACGPVLYVVRVEHRVASLQLLCQQGIASALREERDVGKLNMPSILCSYVTTAFIPTIKP
PIPDPNNIRDFVSYPTAGNERLHCTMKRAEDNPEAGGPCYTLYLEHLGGLVPILKGRRIS
KLRPEFIIMDPKTDSKAGGLGTGKDEVCVNAMISYMTDSCNCSDSSDIELSDEWVGKKSP
KLSRGNRSPKHSRRRRNMESRKSPKMSRTSQEGLRSPRLPTKKPLIRSPSLTRREMSMDG
ISEHNYLAQVTSNIWGTKFKIVGLASFLPANLGAVIYKTSLLHLQPRQMTIYLPEVRRIS
LDFMSLPVFNPNVFSEDEDDLPVMGPSGVTGDNPPCTVNIPIAPIHSPAQAMSPNQSIGL
VQSLLANQNIQLDVLTNPTATASAAAAAAAAASASVPGSDHGQDAVAVQYSGTLGRYSNP
GQVIFNGLEMGPLLAGTLPPPPPPHNLPQQPHQQRPQSQQTHQQQQSKQPQQIQTQQQQQ
QRMQQQHQQLQHQQQQIPQQHQQLQQLHIQQIQQQQQQQTQQHQALQQQYQQQQAALQQQ
QQQIQQQHQHLQQQQIAQQHQQMQLQHEQMHQQQQQMQQQQQQIRQQIIEMRQQQQQLQQ
QHQQIQQQHQQMQRQHQQMQQQLKLQITLPPPPTGYPTISLQQFQVPHPSPESGPERGQQ
GHTQSHTLGRPSLPRSRPPSFIDVDSIRSRPPSFLEADTSRSRPPSFIDIDTIRTRPPSF
IDVDTGTLRSRPPSFLDADSSRSRTLSFIDTDTLRSRPPSFLDAETSVEIQMRKVNPPPP
YPGTVVSATTVTTSTAPQTLITNCDNPNILVTADPCLKKDEFSLHPVGLQYQMGYERITT
FDSSGNVEEVCRPRRRLIRNQNAYAVQGMGGSATLKVTSSSDSKKVHLPYSSATLSRLSV
PRYSIPSRDPPPYPDPANQVNINTTTLPPPQRMDSSHMIHATLRRDRRDVESRLKVSQMV
DASRTLPSKSKINSAALALSYQQRVPTALYTCTQCSSNSSSTSVSVSGGGSSSSGIAGGT
VVRQDFPPGKGAHHSTIIVHSKSTSPLASQSSYNLLSPVDNSRDRTVYVNSAFTEDETLS
QQCRHLTLGEVSLTLKRPPPYQWDPNTSEEFWIPQEQTILAPPPPPTHKPPPPLIFSNAQ
HLDMTRLPFLLSTKPPSSPSTVTFPSGYQISLSPFPPGGGQGGPPLQSMQSPPPPCPPNE
VVAPVPQFTPQDPNLVLPPGYPPNLANLACCPLPPMYPGASSCAGLQLHPVSLHPWNPYS
LPMQDPSGSATLPIKSHQLLEKPVLSPPPPTVPPPPPPSLPPPPPPTELPKPKSPTEELA
ESASSFQEPSSLNESPVPDRQGSDRFSKKSRKRLDSRAEEANMTTVSEGKSKKEGRALSD
FNSLISSPRLGGREKKKPKGQREQLNKTKKLNRTSTTSEFQDSSESEPELFISGDELMNQ
SQSSKKGWKSKRSLRMASELEEIKCRKANEREDRGLGSQGFVYVMANKQPLWNEATQVYQ
LDFGGRVTQESAKNFQIELDGRQVMQFGRIDGNAYILDFQYPFSAVQAFAVALANVTQRL
K
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggaactgtgagcctagtcactcagtagggatgctggctgctgtggaacatggt
cccatcctctgcagcgactccaacatcctctgcctctcctggaagggccgggtccccaag
agcgagaaggacaagccggtgtgccggcggcgctactatgaggagggctggctggccacg
gggaatggaagaggggtggtgggggtaacgttcacatccagccactgcaggagagacagg
aacacccctcagagaatcaacttcaacctgcgaggacacaacagtgaggttgtgttggtc
cgttggaatgagccctttcagaagctggccacgtgtgacatggagggaggcatctttgtt
tggattcaatatgagggacggtggtctgtggagttagtgaatgaccgcggtgcccaggtg
agtgacttcacatggtctcatgacggcacccaggccctgatcgcctaccgtgatgggttt
gtcctagtggggtcagtcagcggacagagacactggtcctcagagattaacctggagagc
cagatcacctgtggcatctggacacctgatgaccaacaggtgttgttcggtacggctgat
ggtcagctgatagtgatggactgccacggtcgtatgctcgcccatgtcctcctgcatgag
tcagatggcatcgtcggcatgtcctggaactgtccctgtttcctggtggaggacagcaca
gagagcgacaccgactctgatgacaataacccacctcaagtacgtagcctgaagcccctt
ctgacagtcagcttcatatcaggagacatcagtttgatgaacaactacgatgacctcgct
cctatcgtcatccgctcaggactcaaagatgtggaggtccaatggtgttcgcagggggac
ctcctggcagtagctgggatggagagacatgggctccctggagtcccctctgactctatc
atgaggaacgccctggtcaagttctacaacgtccaaggagaacatatctacacgttagaa
acacctgcccagcgccccatcaccaccatctgctggggccacagagactcccgtctgttt
ctggcatgtggcccggtgctgtacgtggtgcgtgtggagcaccgggtggccagcctgcag
ctgctgtgccaacagggcatcgccagcgccctgcgagaggagagggacgtgggcaaactc
aacatgccctccatactctgctcctacgtcaccaccgccttcatacccaccatcaagcct
cccattcctgatcccaacaacatccgggactttgtcagctaccccacggctggcaacgag
aggctgcactgcaccatgaaacgagcggaggacaaccctgaggcagggggaccctgttac
accctctacctggaacacctaggggggctggtgcccatcctcaaaggcagacgcatcagc
aagctacgcccagagttcattatcatggaccctaaaacggacagcaaagcaggtgggctt
ggcacaggaaaagacgaggtgtgtgtgaatgctatgatctcctacatgactgacagctgt
aactgttccgactccagcgacattgagttgagtgatgagtgggtcgggaagaagtcgcct
aaactatccagaggaaacaggtctcccaagcattccaggcgtagaaggaacatggaatct
agaaaatctcccaagatgtctaggactagtcaggaagggcttagatcgccaaggttacca
acaaagaagcctctgattcgttctcccagtctgacacgtcgagagatgtccatggatgga
atctctgagcataattacctggctcaagtcacgtccaatatttgggggacaaagttcaaa
attgtgggacttgcttctttcttacctgctaatctgggggcagttatctataagaccagt
ttgctccatctacaaccaaggcagatgacaatctaccttccagaggtgcggagaatatca
cttgacttcatgagcctgccggtctttaaccccaacgtcttcagtgaggacgaggatgac
ttgccagtaatgggaccatctggagtgacaggtgacaaccctccatgtacggtcaacatc
cccatcgcgcccatccacagccccgcccaggccatgtcccccaatcagagcattggtctg
gtccagtccctgctggccaatcagaacattcagctggatgtcctgaccaatcccacggct
acggcttcagcagcagcagcagcagcagcagcggcctcagcctctgttccggggtctgat
catggtcaggatgctgtggcagtacagtacagtgggactctaggaaggtactccaaccca
ggacaggtgatctttaatgggctagagatgggtcccctcctggctggaacgctacctcca
cctccgcctccacataacctccctcaacaacctcaccaacaacgtcctcagtcacaacag
acgcaccaacaacagcagtccaaacaaccacagcagatacaaacgcaacagcagcaacag
cagaggatgcaacaacaacatcaacaactacagcaccaacaacaacagattccacaacaa
catcaacaactgcaacagcttcacatacagcagatccaacagcagcagcaacaacagact
cagcagcaccaagcactgcaacaacagtaccaacaacaacaggcggcactgcaacagcaa
caacagcagatccaacagcagcaccaacacttgcaacagcagcaaatcgctcagcagcac
caacagatgcaactacaacacgagcaaatgcatcagcagcagcaacaaatgcagcagcaa
caacagcagatccgacagcagattatagagatgagacaacaacagcagcagctgcagcag
cagcatcagcagatacaacaacaacaccaacagatgcagaggcagcaccaacaaatgcag
cagcaactgaagctgcagatcaccttgccccctccgcctactggctaccccaccatctcc
ctgcagcagtttcaggtaccccaccccagtcctgagtcggggccagaaagaggacagcag
gggcatactcagagccatactctgggcaggccaagtctaccgcggtccaggcctccatca
ttcattgatgtagacagcatacggtctagacctccttccttcctcgaagcagacacatca
agatctagaccgccgtcattcatcgacatagacacaatacggactagacctccttctttc
attgatgtagataccggtacattgcggtctagacctccgtctttcctcgatgcggactcc
tcccgatccagaactctttcattcatagacacagacacactacggtctagacctccttcc
ttccttgatgcagagacttccgttgagatccagatgaggaaagtgaaccctccaccgccc
tacccaggaactgtagtatctgcaaccaccgtcacaacctccaccgctcctcagaccctc
atcaccaactgtgacaaccccaacatcctggttacagcagacccgtgtctgaagaaagac
gagttctccctccacccagttggtctccagtaccagatgggatacgagagaatcacgacc
tttgacagcagtgggaatgtagaggaagtgtgtcgccctcgcagaagactcatacgcaac
cagaacgcctacgctgttcaaggcatgggaggttcggccacacttaaagtcacctcatcg
tctgacagtaagaaagtccatcttccttacagctcagcgaccctaagccgcctctcagtg
ccacgatactccatacccagcagagacccgcccccctacccagatccagccaatcaggtt
aacattaacacgacaacacttcctcctccccaacgcatggacagtagtcacatgattcac
gctacgttgcggcgtgacaggcgagacgtggaatcccgcttgaaggtgtcccagatggtt
gacgcttcaaggactctaccgtccaagtctaagatcaacagtgctgccctagcgctctct
taccagcagagggtgcctacagctctgtatacctgcactcagtgcagcagcaacagcagc
agcaccagtgtcagtgttagcggtggtggtagtagcagcagtggcatcgcaggaggcact
gtggtgcggcaggatttcccaccaggaaaaggtgctcatcacagcaccatcattgtccac
tccaaaagtacttcgcctctagcttctcagtcgtcgtacaatctgctgagtcctgttgat
aacagcagggataggacggtgtacgtgaactctgcctttactgaagacgagacattaagt
cagcagtgtcgtcacttgactcttggggaagttagtttgactctgaaacgtcctccacca
taccagtgggacccgaacacctcagaggagttctggatacctcaagaacagactatctta
gctccccctccaccaccaacgcacaaaccaccacccccgctcatcttcagcaatgctcag
cacctggacatgacgcggctgcctttcctactctcaacaaaacctcccagcagcccaagc
actgttactttcccatcaggttaccagatctccctgtcacctttccctccagggggaggt
cagggtggacccccactccagtcaatgcagagccctccaccaccctgccctcccaacgaa
gtagttgccccagtcccccagttcaccccacaggaccccaacctggtcttgccacctgga
taccctcccaaccttgccaacctggcttgctgccctctgcccccgatgtacccaggagcc
agctcctgtgccgggcttcagctgcaccctgttagcctgcacccctggaacccctacagc
ctacccatgcaggacccctcaggctctgccaccctccccatcaagtctcatcagttgtta
gagaagccagtcctctccccacctcctcctacggttcctcctcccccacctccttcactt
cctcctcctcctccaccaaccgagctgccaaaacccaaaagccctacagaggagctggcg
gaatctgccagtagcttccaggagccgtcttctctaaacgaaagccctgttccagaccgg
caggggtccgacaggttcagcaagaagagtcgtaaacgtctggacagccgagctgaggag
gcaaacatgaccaccgtctcagagggaaaatccaaaaaggaagggcgcgccctctccgac
ttcaactccctcatctccagccccaggctgggtggcagggagaagaagaaacccaaaggc
cagagggagcagctgaacaaaaccaagaagctgaacaggacaagtaccaccagcgagttc
caggacagttcggagagtgagcccgagctcttcatcagcggagacgaactgatgaaccag
agccagagctccaagaagggctggaagagtaagaggagcctgaggatggccagcgaactg
gaggagatcaagtgcaggaaggccaatgagagagaggaccgcgggctgggcagccaggga
ttcgtctacgtcatggccaataagcagccactgtggaacgaggccacacaggtctaccag
ctggacttcggaggacgggtcactcaggagtctgctaagaactttcagatcgagctggat
ggcagacaggtgatgcagtttggcagaatcgatgggaacgcctatatcctggatttccag
tatcctttctcagcagtgcaggcctttgctgtggccttagccaatgttactcaaaggctg
aagtga
DBGET
integrated database retrieval system
