Coregonus clupeaformis (lake whitefish): 121544263
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Entry
121544263 CDS
T08357
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121544263
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
121544263
microRNA pathway
RISC loading complex
121544263
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
DEAD
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121544263
NCBI-ProteinID:
XP_045070846
LinkDB
All DBs
Position
Unknown
AA seq
2093 aa
AA seq
DB search
MAGLQLVTPASNPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLTKELSHQIRGDLAEHGKRTVFLVNAASSVIQQAASVRTHSDLQVGEYMSVEKT
SSWSREKWSQEMIENQVLVMTCHIFLHVLKSGVLPLWKLNLVVFDECHLAITDHPYRDIM
KLCEGCPCSPRILGLTASILNGKCDPSELEQKIQNLERILRSNAETATDLVVLDRYASQP
REVVLDCGPYLDKSGLSEHLLSELDEALHFLNDCNIPVPREDRDPTFISKQVLSDCRAVL
LVLGPWCADKVAGIMVRELQKYIKHEQEEINRKFLLFTDTILRKVHALCEEHFSPASLDL
KFVTPKVIRLLEILHEYKPFERQQFESVEWYNNRNEDNYVSWSDSEDEDEDEEVEVKEKP
EANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPR
NKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPVSNYIMLAESERTKTFEEDLKTYKAIEKILRNKCSKAAGVSDFEVEPVLDDDNI
LPPYVLRSEEGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTKELKDGRYQSTLYLP
INSPLRVPVAGPIMNCARLAEKAVALLCCENLHKKGELDDHLMPVGKETVKYEEELDLHD
EEETSVPGRPGSTKRRQCYPKAIPECLRDSYPVPERSYYLYVIGMVLTTPLPDELNFRRR
KLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISMELQKAGFTLSAVQLDLITRLH
QYIFSHILRLEKPALEFNPTQADSAYCVLPLNVVEDSNTLDLDFKFMEDIEKSEARIGIP
TTQYTKQNPFTFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSRFPSPEYQTFAE
YYKTKYNLDLSNVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNK
QILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGAQTLPSDFR
YPNLDFGWKKSIDSKSFICLRDEEEEEGEEDSGDDNCKQQGQTVATDPGLAAAVSQQPCS
DCHVSSRPEGDDVGQHPEDDRPEEEQPDSASCTSILTNGTAPFANDNSDHAHLHNGRDNC
QCLPAGSGLPLETEKEVSTTTQTTTSVVPVQPSLSIKNQNLTPTPPRTQSQPQPRTQPRT
QPQPQPRTQPRTQPQPPQPRTQPQPPQPQSPQPQPQPPQPQPQAQPQPPQPPPKPPQPQP
GTQPQPPQLQPGTQPQPSQPPLQPPQTQPGTQPQPPQTQPGTQLQPPQLQPSDECRPGRT
SELREGDGHHVNQATSDCCSPATVTVPAGTTPITTAPLPDPSEALETQEITTSSSVGGDT
IGPCPKTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGR
LSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSSEDKWDEDEA
KQDLLANGSAGEELFVEELGEEVLEEDEDLMWKEPKDEVNVEDDLEYYHEHIKFIDNMLI
GSGAFGKKISLGTFPPAPAPAPAAPATPGRSPSPSARSSSPAAEPSYGEWKPPKKPVPVP
TPHYPSEPSGGGSADEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPLEENCGAELGKQSI
SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLPVERRRLKEKGGV
TEVANLDLQYGWLKIPPRCIFDHPDAERTLNHLISGFENFERKICYTFQNKAYLLQAFTH
ASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLA
VQYDFHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEAKEEDIEVPKAMG
DIFESLAGAIYMDSRMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSP
AERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNN
NT seq
6282 nt
NT seq
+upstream
nt +downstream
nt
atggcaggactccagctggtcacccccgcctccaatcccatggggcctttctttggtctc
ccgtggcaacaggaggccatccacgacaacatctacacgcctaggaaatatcaggttgaa
cttcttgaagcagctcttgaacacaatactattgtctgcttaaatactggctcagggaag
acctttattgcagtactcctaactaaagagctctcccaccaaatccggggagacttagcc
gaacacgggaagaggacagttttcctggtgaatgcagcatcgtctgtgattcagcaagca
gctagtgttaggacccactctgatctccaggttggagaatacatgagtgtggagaagacc
tcatcatggtccagggaaaagtggagccaagaaatgatcgaaaatcaggtgctcgttatg
acatgccatatcttcctgcatgtgctgaagagtggagtgttgccactatggaaactcaac
ctggtggtgtttgatgagtgtcacctggcaatcacggatcatccctaccgggatataatg
aagctatgtgagggctgtccgtgcagccctcggatcctgggcctcactgcgtccattctg
aatggtaaatgtgacccgtctgaactggagcaaaagatccagaacctggagcggatcctg
cggagcaatgcagagaccgctactgaccttgttgtcctcgacagatatgcctcccagccc
agagaggtggtactggactgtggaccctacctggacaagagcggcctctcagagcatcta
ctgagcgagctggatgaggctctccacttcctcaacgactgcaacatacctgtgcctcga
gaggacagagaccccaccttcatatccaaacaggtgctgagtgactgccgggcggtgctg
ctggtgctggggccatggtgtgccgacaaggtggctggcatcatggtgagggagttgcag
aagtacattaaacacgaacaggaagagatcaacaggaagttcctgctcttcaccgacacc
atcctgaggaaggtccacgccctgtgtgaggaacacttctccccggcctctctggacctg
aagtttgtgaccccgaaggtcatccgtctcctggagatcctccatgagtacaagcccttc
gagaggcagcagtttgagagtgtggagtggtacaacaaccgcaacgaggacaactacgtg
tcgtggagtgactcggaggatgaagacgaggatgaggaggtggaggtgaaggagaaaccc
gaggctaacttcccctcgcctttcaccaacatcctttgtgggatcatcttcgttgagagg
cgctacacggccgtcgtcctcaaccggctgataaaggaggcggggaagcaggacccagag
ctggcctacatcagcagtaacttcatcacaggacacagcatcggcaagaaccagccacgt
aacaagcagatggaggtggagttcaggaaacaggaagaggttctgcgtaagtttcgtgcc
cacgagaccaacctgctcatagcgaccagcatcgtggaggaaggggtagatattcccaag
tgtaacctggtggtgaggtttgacttgcccactgagtacaggtcctacgttcagtctaaa
ggcagagccagagctcctgtctccaactacatcatgctggctgaaagtgagaggaccaag
accttcgaggaagacctgaagacctacaaggccatagagaagatcctgagaaacaagtgt
tccaaggcagcgggggtcagtgactttgaggtggaaccggtgctggatgatgacaacatc
ctgccaccttacgtgctccgctctgaggaaggagggccccgcgtcaccatcaacacggct
atcggacacatcaacagatactgtgcccgtctgcccagtgacccgtttacccacttggca
cccaagtgtaagacgaaggagctgaaggatgggcgctaccagtcaaccctctacctgccc
atcaattcccctctacgggtgcccgttgctgggccaataatgaactgtgcacgactggca
gagaaggcagtggcactactttgttgtgaaaatcttcacaaaaaaggtgagttggatgac
cacttgatgcctgtggggaaagagacagtgaagtatgaggaggaactggatctccatgac
gaggaggagaccagtgttccaggcagaccaggatccaccaagagaaggcagtgctaccct
aaagctataccagagtgtcttcgggacagttaccctgtaccggagcggtcttactacctg
tatgtgatcggcatggtcctcaccacccctctgcctgatgagctcaacttccggcgcagg
aagctctaccctccagaggacactaccaggtgctttggcatcctgaccgccaaacctata
cctcggatcccccactttcctgtgtacacgcggtctggcgaggtgaccatctcgatggag
ctccagaaggctgggttcactctaagtgctgtccaactggacctgatcaccagactacac
cagtacatattctctcacatcctccgcctggagaaacctgctctggagttcaatcccacg
caggccgactcggcctactgcgttctacctctcaatgttgttgaggattccaacactcta
gatttggactttaaattcatggaggacatagagaagtcagaggctcgtattggcattcct
accacccagtacaccaagcagaaccccttcaccttcaaactggaagactaccaggacgct
gtcatcattccacggtatcgtaactttgaccagcctcaccgcttctacgtggctgacgtt
tacacagacctcacacctctcagcaggtttccatcgccggagtaccagacgtttgctgag
tactacaaaaccaagtacaacctggacctgtccaacgtaaaccagccactactagacgta
gaccatacctcgtcacgcctgaacctgttaacccctcgccacctgaaccagaaggggaaa
gccctgcccctcagcagtgcagagaagaggaaggccaagtgggagagtctacagaacaaa
cagatcctggtcccagagctgtgtgccatccaccccatcccagcctctctgtggaggaag
gctgtgtgtctccccagcattctgtatcgccttcactgcctgctcacagccgaggagctg
cgggcccagacggccagcgacgctggagtaggagctcagaccctgccctctgacttcaga
tatccaaacctggactttggatggaagaagtccatcgacagtaagtcattcatctgtctg
cgtgatgaggaagaggaggagggggaagaggacagcggtgacgataactgtaaacaacag
ggccagactgtagccactgaccctggccttgctgctgctgtttcccagcaaccctgtagt
gactgtcatgtctcctcgcggcctgagggggacgacgtcggccaacaccccgaagatgac
agaccagaggaggagcagccagactccgcctcctgcaccagcatcctcactaacggcact
gccccatttgccaatgacaacagtgaccacgcacaccttcacaacggacgtgacaactgc
caatgcctcccggctggttctggcttgccactggagactgaaaaagaagtgtcaacaaca
acacaaaccactacctcagttgttcctgttcagccctctcttagcatcaagaaccagaat
ctaaccccaacaccaccccggacccagtctcagccccagccacggacccagccccggacc
cagcctcagccccagccacggacccagccccggacccagcctcaaccccctcagccccgg
actcagcctcaacctcctcagccccagtcccctcagccccagcctcaaccccctcagccc
cagccacaggcccagcctcagccccctcagcccccgcctaaaccccctcagccccagcca
gggacccagcctcaaccccctcagctccagccagggacccagcctcaaccctctcagccc
ccgcttcaaccccctcagacccagccagggacccagcctcaaccccctcagacccaacca
gggacccagcttcaaccccctcagctccagcctagcgatgaatgtagaccagggaggacc
tcagagctccgtgagggcgacggacaccacgtgaatcaagctacctcagactgctgcagc
ccagcaacagtgacggtgcccgccggcaccactcccatcaccacagcacctttacctgac
ccctcagaggccctagagacccaggagatcaccaccagtagctctgtcgggggtgatacc
attggcccctgccccaagaccctggggcccaaccctggtctcatccttcaggccctgacc
ctgtccaacgccagtgacggcttcaacctggagcgtctggagatgctgggagactcgttt
ctgaagcacgccatcaccacctacctgttctgtacctaccccgacgcacatgagggacga
ctctcctacatgaggagcaagaaggtgagcaactgtaacctgtatcgtctggggaagaag
aaaggtcttcctagcaggatggtggtgtccatctttgacccgccggtcaactggctgcct
cctggctacgtggtaaaccaggacaagagcagcgaagacaaatgggacgaggatgaggcc
aaacaggacctcttggccaacggtagtgctggagaggagttgtttgtggaggagctaggg
gaggaggttctggaggaggatgaagatctgatgtggaaggagcctaaagacgaggtcaac
gtggaggacgacctggagtactaccatgagcacatcaagttcatcgacaacatgctcatt
ggctccggtgcctttggcaagaagatttcccttggtaccttccctcctgcccctgccccc
gcccccgccgcccccgccacccctggccgaagccccagcccctctgcccgctcctcctcc
cctgcagctgagcccagctacggggagtggaaaccccccaagaaacctgtcccggtcccc
accccccactacccctcagagcctagcggtggtggctcagcagatgagtttgactacagc
tcgtgggacgccatgtgttacctggaccctagtaaggcgggggaggaagatgatttcgtg
gtgggtttctggaacccgttggaggagaactgcggggcggagctggggaaacagtccatc
tcctatgacctgcacacggagcagtgcatcgctgacaagagcatcgctgactgtgtggag
gccttgctgggctgctatctcaccagctgtggggagagggctgctcagatgttcctctgc
tcactgggactcaaggtgttaccggtggagaggaggaggctgaaggagaagggcggggtc
acagaggtcgccaaccttgacctccagtatggctggctgaagatcccaccccgctgtatc
ttcgaccacccggacgccgagcgcaccctcaaccacctcatctccggctttgagaacttt
gagaggaagatctgctacaccttccagaacaaggcctacctgctgcaggccttcactcac
gcctcctaccattacaacaccattacagattgttaccagagacttgagtttcttggcgat
gcaattttagactacctcataacgaagcacctttatgaagacccgcgccaacactctccc
ggcgtgctcacagacctgcgctcggcgttggtcaacaacaccatcttcgcctccctggcc
gtccagtacgacttccacaagtacttcaaggctgtgtcgcccgagctgtttcacgtcatc
gacgactttgtgcaattccagctggagaagaacgagatgcaaggcatggactctgagctg
cggcgctcagaggaagacgaggcgaaagaggaggacattgaggtccccaaggcaatggga
gacatatttgagtcactagccggagcaatttacatggatagcaggatgtcactggagaca
gtgtggcaagtgtattatccaatgatgaggccacttatagagaaattctcagctaatgtc
cctcgctctccagtgcgggagctgttggagatggagcctgagacagccaaattcagccct
gcggaacggacgtatgacgggaaggtccgtgtaacagtggaggttgtgggcaaaggcaag
ttcaaaggcgtgggccgcagctaccggatcgccaagtctgccgccgcacgccgggccctg
cgcagcctcaaagccaaccaacctcaggtcccaaacaactga
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integrated database retrieval system
