Coregonus clupeaformis (lake whitefish): 121544529
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Entry
121544529 CDS
T08357
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04140
Autophagy - animal
cclu04142
Lysosome biogenesis
cclu04148
Efferocytosis
cclu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
121544529
04140 Autophagy - animal
121544529
04148 Efferocytosis
121544529
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121544529
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121544529
Membrane trafficking [BR:
cclu04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
121544529
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
121544529
NCBI-ProteinID:
XP_041710400
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All DBs
Position
29:6684557..6749056
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AA seq
876 aa
AA seq
DB search
MHDAYEPVPILEKLPLQIDCLAAWEEWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLFVVSQYKILISLLENNIHVHDLLTFQQITVVSKARGATLFACDLQQSPSGE
AQLRMCVAVKKKLQLYYWKDREFYELQGDFAAPDIPKSMAWCQNSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVVPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQSPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGPNIVYVASNHFVWRLVPVSI
ASQIRQLLQDKQFELALQLAKMKDDVEGDKRQQVHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPTDYRKQLHYPNPLPTLSGAELEKAYLALIDYLTQKRSHLVKQL
NDSEPSTPSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLDNNHCHIEES
EYILKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGMENLG
IIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKILNFLKEGFKELAVPYLEHIIHVWE
ETGPEFHNVLIQLYLERVQGLMKQYLNSLPEGVPAVAAGKEEGDLGEFRNKLLCFLEVST
SYEPGRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTHMAEEYCHGHYDEETD
RNKDVYLSLLRMYLSPPDVQCLGPIKMELLEPQTNLKAALQVLELHHSKLNTTKAIDLLP
ANTQIREIRVFLESVLEEKAQRKRFDQVLKSLLQAEFLRVQEERIFHQQVKCIITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRGVCPTEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcttacgaaccggtccctatcctggagaaactgcctctccagattgattgt
cttgcggcctgggaggaatggcttctggtggggactaaaccaggccatctcctgctctac
aggataaaaaaggatgcaggtaccaacaggtttgaggtgactctggagaagtccaacaag
aacttctccaagaagatccagcagctgtttgttgtgtcacagtacaagatcctcatcagt
ctgttagagaacaacatccatgtccatgatctgttgaccttccagcagattactgtggtc
tccaaggccagaggggcaacgctcttcgcctgtgacctgcagcagtccccctcaggagag
gcccagctgaggatgtgtgttgctgtgaagaagaagcttcagctgtactactggaaggac
agggagttctatgagctacagggagactttgctgctccagacatcccgaagtccatggcc
tggtgtcagaactccatctgtgttggcttcaagagggactactacctcatccggatggat
ggtcgtggttccatcaaggagctcttccccacggggaagcagctggagccactggtggtt
cccctggctgatgggaaggtggcggtgggtcaggatgacctcacagtggtgctcaacgag
gagggcgtctgcactcagaagtgtgccctcaactggaccgacatccccatcgctatggaa
catcagtccccctacatcatagctgtcctgccgcgctatgtggagatcaggacctttgaa
cccaggctgctggttcagagtgtggagctgcagagaccacgattcatcacatcagctggg
cccaatatagtttacgtggccagcaaccattttgtgtggcgcctggtgcctgtgtccatc
gccagccagatcagacaactcctacaggacaagcagtttgaactggccctgcaactggcg
aagatgaaggatgatgtggaaggcgataagagacagcaggttcaccacatccagaatctc
tacgccttcaatctgttctgtcagaagaggtttgatgactccatgcaggtgtttgctaag
ctcggcacagatcccacccatgtgataggtctgtatccggacctgctccccaccgactac
cgtaagcagctgcactaccccaaccccctgccgactctgtcaggagcagagctggagaag
gcctacctcgcgctcatagactatctgacacagaaacgcagccacctggtgaagcagctg
aacgactcggagccctccaccccctctcccctcatggaaggaacgcccaccatcaagagc
agaaagaagcttctgcagatcatcgacaccacgctgctcaaatgctacctgcataccaac
gtggccctggtttcccctctgttgcggctggacaataaccactgtcacattgaggagagc
gagtacatcctgaagaaggcccacaagtacagcgagctcatcatcctgtatgagaagaag
ggcctgcaccagaaagccctgcaggtgttgttggatcagtcgaccaaagctaactctccc
ctaaaggggcatgagaggacggtgcagtacctccagagactggggatggagaatctcggc
attatctttgagttctctccctgggtgctgaagatctgtcctgaggacggactgaagatt
tttactgaagacctgacggaggtagagaccctgcccagagacaagattctgaacttcctg
aaggagggttttaaggagctggctgtgccctacctggagcacatcatacatgtctgggag
gagacaggaccagagttccataatgtcctcatacagctgtacctagagagggtacagggg
ctcatgaagcagtacctcaactccctgcccgagggggttcccgcagtggctgctgggaag
gaggagggggacttgggagagttcaggaacaagctgctgtgtttcctagaggtctctacc
agctacgagcccggacgacttatcagtgacttcccctttgatggtcttctggaggagcgg
gcccttctgctgggtcggatggggaaacatgaacaggccctcttcatctacgtccacgtc
ctgaaggacacacacatggcagaggagtactgtcacgggcattatgacgaagagacagac
agaaacaaagatgtgtacctgtctctactgcgcatgtacctgtcccctcctgacgtccaa
tgccttgggccaatcaaaatggagctgttggagccacagaccaatctaaaagcagctcta
caggtcctggagctgcaccacagcaagctgaatacaaccaaggccatcgacctgctgcca
gccaacactcagatcagagaaattcgtgtgttcttggagagtgttctggaggagaaggct
cagaggaaacgctttgaccaggtcctcaagagcctgctgcaggctgagttcctacgggtc
caggaggagcgtatcttccaccaacaggtgaagtgtatcatcacagaggaaaagacctgc
agggtctgtaagaagaagataggaaacagcgccttcgccaggtatcccaacggcgttgta
gttcattacttctgctgtaaggaccgaggggtgtgtcctacggagcagtga
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