Coregonus clupeaformis (lake whitefish): 121544544
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Entry
121544544 CDS
T08357
Symbol
vti1b
Name
(RefSeq) vesicle transport through interaction with t-SNAREs homolog 1B
KO
K08493
vesicle transport through interaction with t-SNAREs 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
121544544 (vti1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121544544 (vti1b)
Membrane trafficking [BR:
cclu04131
]
SNARE
SNAP-25[N] (Qb)
Vti1
121544544 (vti1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
V-SNARE
V-SNARE_C
Sec20
Fusion_gly
Motif
Other DBs
NCBI-GeneID:
121544544
NCBI-ProteinID:
XP_041710420
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All DBs
Position
29:complement(1807337..1822898)
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AA seq
225 aa
AA seq
DB search
MSSEEFEKLQEIYKSLYDELKLMPDRLLKCQGEEKKRLVRTFDERHGEAVEVLQGMEQEL
IGAPSSYRNTMSTKLRLYRRDLGKLQREVKSSDLSSSSTRPAEGAYGVYSSQNEHSTQLQ
SQRTLLLQGHEHLNNASQSIERSQRIAAETDQIGVDIIEELGDQREQLDRTRDRLVNTGE
NLSRSRKILRAMSRRLMTNKLMLSVIILMELAILGAVVYLKFFRK
NT seq
678 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcggaagagtttgaaaagctgcaggagatctacaaatccctttatgacgaactg
aagttgatgcccgacagattactgaaatgtcaaggagaggagaagaagaggttggtgagg
acttttgatgagagacatggagaggcagtggaagtgctgcagggcatggagcaggagttg
atcggtgctccatcgtcctaccgtaacaccatgtccaccaaactgcgtctgtaccgcaga
gacctggggaagctccagagagaggtgaagagctctgacctgtcctcctcctctacccgg
ccagcagagggcgcctacggcgtctactcctctcagaacgaacacagtacccagcttcag
tcgcagaggaccttgctgctccagggacacgagcacctgaacaacgccagtcagagtatc
gagaggagtcagcgcatcgctgcggagacggaccagatcggcgtggacatcatcgaggag
ctgggagaccagagagaacagctggatcgaaccagagaccgactggtcaacactggggag
aacctcagccggagcaggaagatcctgcgagcaatgtcccgccgactgatgaccaacaag
ctgatgttatcagtcatcattctgatggagctggccattctgggtgctgtcgtctacctc
aagttcttccgcaagtag
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