Coregonus clupeaformis (lake whitefish): 121544582
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Entry
121544582 CDS
T08357
Name
(RefSeq) macrophage colony-stimulating factor 1 receptor 1-like isoform X2
KO
K05090
macrophage colony-stimulating factor 1 receptor [EC:
2.7.10.1
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04060
Cytokine-cytokine receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121544582
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
121544582
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cclu01001
]
121544582
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
cclu04090
]
121544582
Enzymes [BR:
cclu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
121544582
Protein kinases [BR:
cclu01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
121544582
CD molecules [BR:
cclu04090
]
Proteins
121544582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
Ig_2
ig
VEGFR1-3_N_Ig-like
C2-set_2
Ig_VEGFR-1-like_5th
Pkinase_fungal
Conotoxin
Motif
Other DBs
NCBI-GeneID:
121544582
NCBI-ProteinID:
XP_041710478
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All DBs
Position
3:30126917..30148446
Genome browser
AA seq
985 aa
AA seq
DB search
MELYLAFMLGILPTAAQEWRRPVIKLNSEVVVGPDVVLNPGTPLVLKCEGDGPVNWLTRL
SKHKSLISKGNGRVRTFRVERPSAEHTGTYKCEYTSGNVKGRDLFSTVHVYVKDPDSLFW
TSSTSLHVVRKEGEDHLLPCMLTDPEATDLGLRMDNCTSVPPGMNYIADPRRGILIRNLH
PSYNADYVCSAKLHGVERTSKAFNLNIIQRLRFPPYVFLEMDEYVRIVGEKLSIHCTTHN
PNFNFNVTWNYSSKKRFTIEQNVQSVDTNRLDIESILTIPAVDQSDTGNITCIGTNEAGV
NKSTTSLLVVEEPYIRLSPQPSSKLAHQGLSIEVNEGEDRKLSVLIEAYPQIIGQHWETP
TASSTQEQTFTRYNNRYSATLLLKRMITQEQGQYTFYARSSMANASITFQIQMYQRPVAV
VRWENITTLTCTSFGYPAPIILWYQCSGIRTTCNENATGLQMPAPLLAQTVEVQREEYGA
VEVQSVLTVGPSSRRMTVECVAFNLVGVGKDTFAMEVSDKMFPSTLSGAAGVLAFLLLLL
MVLLYKYKQKPRYEIRWKIIQANEGNNYTFIDPTQMPYNEKWEFPRDKLKLGKILGAGAF
GKVVEATAYGLGEDDNAMRVAVKMLKARAHSDEREALMSELKILSLLGQHKNIVNLLGAC
TQAGPVLVITEYCSYGDLLNFLRHKQETFLNFVMNIPEVPEETSDYKNLCEGKQFIRNDS
GIASVCSDSYLEMRPGPQPVNSSLDSVCEEGGPDSWPLDMDDLLRFSYQVAQGLDFLAAK
NCIHRDVAARNVLLTDRRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCLY
TVQSDVWSYGILLWEIFSLGKSPYPSILVDTKFYNMIKCGYQMSRPDFALPEMYTIMKMC
WNLEPTERPTFSKINQLIERLLGEQPERPDQQHQNVQLQQDMMVEELEPCDDDDEPKCCD
GSCDQLCEHEEEEQPLMKTNNYQFC
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggagctatacctggcctttatgctggggatcctgcccactgcagctcaagaatggcgg
cgtcctgtgatcaagttaaactcagaggtcgtggttgggcctgacgtagtactgaaccct
ggcaccccattggtcctgaagtgtgagggggatgggccagtcaactggctgacccggtta
tccaaacacaagagcttaatctccaagggcaacgggagagtcagaaccttcagggtggaa
cgtccctctgcagaacacaccgggacatataagtgtgaatatactagtgggaacgtcaag
ggtcgggacttgttctctactgtgcacgtctatgtgaaagacccagacagcctgttttgg
accagcagcacatccctgcatgtggtgaggaaggagggggaggaccaccttctcccctgc
atgctgaccgacccagaggccacagacttggggctccgcatggacaactgtacctctgtg
cccccagggatgaactacatagcagacccccgcagaggcatcctcatccgcaacctccac
cccagctacaatgctgactacgtctgcagcgccaagctccacggggtggagaggacatcc
aaggctttcaacctcaacatcatccaaaggctgcgtttcccaccttatgtattcctggag
atggacgagtatgttcgtatcgtgggtgagaagctgagcatccactgcaccacacacaac
cccaacttcaactttaatgtcacgtggaattacagctccaaaaagagatttaccatagag
cagaatgtccaatcagtggacactaaccgtctggacattgaaagcatcctgaccatccct
gcagtggaccagtcagacacaggcaacattacctgcatcggcaccaacgaggctggagtg
aacaaatctaccacctctctgctggttgtagaggagccctacatccgtctttctccccag
ccgtcctccaagctggctcaccagggcctgtccattgaggtgaacgagggggaggaccgg
aagctcagtgtcctgatcgaggcgtacccccagatcataggccagcactgggagacccct
acagcctcctccacgcaggaacaaacctttacacgctataacaataggtattccgctacc
ctgctgctcaagaggatgattacacaggagcagggccagtacaccttctatgccaggagt
tccatggccaacgcatccattacattccaaatccaaatgtatcagaggccggttgccgtg
gtgagatgggagaacatcaccaccctcacgtgcacgtcgtttggttaccctgctcccata
atcctctggtaccagtgctctggaatccgaaccacgtgcaatgagaatgcaacaggtctc
cagatgcctgctcctctcttggcccaaacggtcgaggtccagagggaggagtacggagcg
gtcgaggtccagagcgtcctgacagtgggaccatccagtcgtaggatgaccgtggagtgt
gtcgccttcaacctggttggcgtcggtaaagacacctttgccatggaagtttccgataaa
atgttcccctccaccctatcgggagcagctggtgttctggccttcctcctcctgctactc
atggtcctgctctacaagtacaagcagaaaccgagatatgagatccggtggaagatcatc
caggccaatgaaggaaacaactacacctttatcgacccaactcagatgccgtacaatgag
aagtgggagtttcccagggacaagctcaagctagggaagatcctaggagccggggccttt
gggaaggtggtggaggccacagcctatggtctgggggaggacgacaacgcgatgcgagtg
gctgtaaagatgctcaaagccagggcccactcagatgagagagaggctttgatgtcagaa
ctgaagatcctgagtctcctgggacagcacaagaacattgtcaacctcctgggagcctgc
actcaggcgggacctgtactggtgatcactgagtactgtagttatggcgaccttctgaac
ttcctgcgacacaagcaggagaccttcctgaactttgtcatgaacataccagaggtacca
gaagagaccagtgactacaagaacctctgtgaggggaaacagttcatcagaaatgatagt
gggatagccagtgtgtgttctgacagctacctggagatgaggcctggtccccagcctgtc
aactcctctctggactctgtgtgtgaggagggtgggccggactcgtggccgttggacatg
gatgacctgctgaggttctcctaccaggtggctcagggcctggacttcctggcagccaag
aactgtattcaccgggacgttgcagcccggaacgttctcctgacagaccgccgtgtggct
aagatctgtgacttcggcctggcacgtgacatcatgaatgactccaactatgtggtgaag
ggcaatgcgcgtctgccagtgaagtggatggctccagagagtatctttgactgtctctac
actgtccagagtgacgtctggtcctatgggatcctgctatgggagatattctctctagga
aagagcccctaccccagtatcctggtggacactaaattctacaacatgataaagtgtggt
tatcagatgtctcgaccagacttcgcacttccagagatgtatacgatcatgaaaatgtgc
tggaatctggagccaacagagcgaccgaccttcagcaagatcaaccagctgattgagaga
ctactgggtgagcagccagaacgtccagatcagcagcaccagaacgtccagctgcagcag
gacatgatggttgaggagttggagccgtgtgatgatgatgatgagcctaagtgttgtgat
ggctcctgtgaccagttgtgtgagcacgaagaggaggagcaaccgctgatgaagaccaat
aactatcagttctgctga
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