Coregonus clupeaformis (lake whitefish): 121544590
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Entry
121544590 CDS
T08357
Name
(RefSeq) serine/arginine-rich splicing factor 5 isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121544590
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121544590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121544590
Spliceosome [BR:
cclu03041
]
Common components
Common spliceosomal components
SR proteins
121544590
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
RRM_occluded
Nup35_RRM_2
OB_RNB
Motif
Other DBs
NCBI-GeneID:
121544590
NCBI-ProteinID:
XP_041710485
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All DBs
Position
29:complement(3156294..3163124)
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AA seq
322 aa
AA seq
DB search
MSGCRVFIGRLSPHARERDVEKFFKGYGRIREVNLKNGFGFVEFDDHRDADDAVYELNGK
ELCSERVTIEHARSRRGRGGGPGMGGGGGGGGGRFSPRFSSYRQGSGDRRGGGGSSRYGP
PVRTEHRIIVENLSSRISWQDLKDLMRKVGEVTFVDAHRTNKNEGVVEFASHSDMKNAID
KLDGTDLNGRKLKLSEDRKSRRSRSRSRGSRSYSRSRSRSRSPRSKSPSRSRSRNRSRSP
RSASRTPEKKPSSGGGGRAAHRSTSRSPSRSKSRSRTPPARSRSPAPRSRTPPARSRTPP
ARSRSPAPARKPSRSPSVESQH
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgagtggatgtcgtgtgttcatcggtcgtttgagccctcacgctcgtgagagggacgtg
gagaaattcttcaaaggatatggaaggatccgagaagtaaatttgaagaacggattcggc
tttgtggagtttgacgaccacagagacgctgatgatgcagtttacgagctgaatggcaag
gaactctgtagtgaaagggtgactatagagcatgcccgatccagaagagggagaggtggt
gggcctgggatgggtggcgggggtggaggaggaggaggacgcttctcacctcgtttcagc
agctaccgccaggggtctggtgatcgccgcggtggtggcgggtccagtaggtacgggccc
ccggtgaggacggaacacagaatcatcgtggagaacctgtcgtcacgcatcagttggcag
gacctgaaagacctgatgaggaaagttggggaggtcacctttgtggatgcccaccgaacc
aacaagaacgaaggggtggtggagtttgcatcgcacagcgatatgaagaatgccatcgat
aagcttgatggaacagacttgaatggacgcaagctgaagctgtctgaggatcgcaagagc
cgccgcagcaggagtcgttcccgtggctctcgtagctactcccggtcccgtagccgctcc
cgttccccccgctccaagtcccccagccgtagcaggagccgtaaccgctccaggagcccc
cgctccgccagccgtaccccggagaagaagccttcctctggaggagggggcagggctgca
catcgctccacctcacgctccccgtcccgttccaaatcccgttcccgtacccctcccgca
cgctctcgttcccctgccccccgttcccgtacccctcccgcacgctcccgtacccctccc
gcacgctcccgttcccctgccccggcccggaagccatctcggtccccatcggtggagagc
cagcactga
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