Coregonus clupeaformis (lake whitefish): 121544593 Help Entry 121544593         CDS       T08357                                  Symbol actn1 Name (RefSeq) alpha-actinin-1 isoform X1   KO K05699   actinin alpha 1/4 Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu04510   Focal adhesion cclu04520   Adherens junction cclu04530   Tight junction cclu04810   Regulation of actin cytoskeleton Brite KEGG Orthology (KO) [BR:cclu00001]  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     121544593 (actn1)    04520 Adherens junction     121544593 (actn1)    04530 Tight junction     121544593 (actn1)   09142 Cell motility    04810 Regulation of actin cytoskeleton     121544593 (actn1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:cclu04131]     121544593 (actn1)   09183 Protein families: signaling and cellular processes    04812 Cytoskeleton proteins [BR:cclu04812]     121544593 (actn1)    04147 Exosome [BR:cclu04147]     121544593 (actn1) Membrane trafficking [BR:cclu04131]  Exocytosis   Small GTPases and associated proteins    Rab associated proteins     121544593 (actn1) Cytoskeleton proteins [BR:cclu04812]  Eukaryotic cytoskeleton proteins   Actin filaments / Microfilaments    Actin-binding proteins     Cross-linking proteins      121544593 (actn1) Exosome [BR:cclu04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    121544593 (actn1)   Exosomal proteins of colorectal cancer cells    121544593 (actn1)   Exosomal proteins of bladder cancer cells    121544593 (actn1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Spectrin CH EFhand_Ca_insen EF-hand_1 EF-hand_6 EF-hand_8 EF-hand_7 Uds1 EF-hand_5 XisI Motif Other DBs NCBI-GeneID:  121544593 NCBI-ProteinID:  XP_041710490 LinkDB All DBs Position 29:complement(2799677..2940125) Genome browser AA seq 896 aa AA seqDB search MPTFDMDPYDGDENNYMPQEDDWDRDMLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIE EDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALHYITSKGVKLVSIGAEEIV DGNAKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDG LGFCALIHRHRPELIDYGKLRKDDPMTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEK AIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPW LENRAPENTMQAMQQKLEDFRDYRRQHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPS EGKMVSDVSNAWGGLEGAEKGYEEWLLNEIRRLERLDHLAEKFRQKAAIHETWTEGKEAM LQARDFETASLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARC QNICDQWDALGALTQKRSEALQRTEKLLETIDQLYLEFAKRAAPFNNWMEGAMEDLQDTF IVHTIEEIQGLSTAHEQFKATLPEADKERGAILGIHNEIAKIVATYHVNMAGTNPYTTIN PQEINAKWDKVRQLVPQRDQALIEEHARQQNNERLRRQFANQANVIGPWIQTKMEEIGRI SIEMHGTLEDQLTHLRQYEKNIVNYKPKIDQLEGDHQLIQEALIFDNKHTNYTMEHIRVG WEQLLTTIARTINEIENQILTRDAKGISQDQMNEFRASFNHFDRDHSGTLGAEEFKACLI SLGFDIANDAQGEAEFSRIMSIVDPNRVGVVTFQSFIDFMSRETADTDTADQVMASFKVL AGDKNYILADELRRELPPDQAEYCIARMAPYAGPDAIPGALDYMSFSTALYGESDL NT seq 2691 nt NT seq  +upstreamnt  +downstreamnt atgcctaccttcgacatggatccctatgatggagatgaaaacaattatatgcctcaggaa gatgactgggaccgggatatgctgttggatccggcgtgggagaagcagcagagaaagacg ttcacggcctggtgtaactcccacctgaggaaagccggaacgcagatcgagaacattgag gaggacttcagagatggactgaaactcatgctgctgttggaggtcatatcaggagagcgc ttggccaaaccagagagagggaagatgagagtccacaagatctccaacgtcaacaaagct ctccactacataaccagtaaaggagtcaagctggtgtccatcggagctgaagagatcgtc gacggcaacgctaaaatgaccctaggaatgatctggaccataatccttcgcttcgccatc caggacatctctgtggaagaaacatcagccaaagagggtcttcttctgtggtgccagagg aagactgctccctacaagaatgtcaacattcagaactttcacattagctggaaagatggg ttgggattctgtgctctcattcacagacaccgtccagagctcattgactatggcaagctg cgcaaggatgacccgatgactaacctaaacacagccttcgacgtggcagagaagtacctg gacatccccaagatgttggatgctgaggacatcgtaggcacagcccgcccggatgagaag gccatcatgacctatgtgtctagcttctaccacgccttctctggcgcccagaaggcggag acagcagccaatcggatctgcaaggtgctggctgtcaaccaggagaatgagcagctgatg gaggactacgagaagctggctagtgatctcttggagtggatccgtcgcaccatcccgtgg ctggagaaccgtgccccagagaacaccatgcaggctatgcagcagaagctggaagacttc agggactatcgccgccagcacaagccccccaaggtccaggagaagtgccagctggagatc aacttcaacaccctgcagaccaaactgagactcagcaacagacctgccttcatgccttct gaggggaagatggtctcggacgtctctaacgcgtggggcggtctggagggggcggagaag ggttatgaggagtggctcctcaacgagatacgtcggctggagagactcgaccacctggcc gagaagttccgccagaaagcagccatccacgaaacctggactgaaggtaaggaggcgatg ctgcaggcgcgagactttgagacagcctctctgtctgagatcaaggctctgctgaagaaa catgaggccttcgaaagtgacctggctgcgcaccaggaccgcgtagagcagatagctgcc atcgcacaggagttaaacgagctggactactatgactcgcccagcgtgaacgctcgctgc cagaacatctgtgaccaatgggacgccctgggagccctgactcagaaacgcagcgaggct ctgcagagaactgagaagcttctggagaccatagaccagttatatcttgagtttgccaaa cgagctgctccgttcaacaactggatggagggcgccatggaggacctgcaggacaccttc atcgtccacaccatagaggaaatacagggtctcagtacagcccatgagcagtttaaagcc actctccctgaggcggataaggaacgcggtgccatcctgggaattcacaatgagatcgcc aagatagtggccacctaccatgtgaacatggccggcaccaacccctacaccaccatcaac cctcaggagatcaacgccaaatgggacaaggtgagacagctggtgccccagagggaccag gccctgatcgaggaacacgcccgccagcagaacaacgaacgtctccggaggcagtttgcc aaccaagccaatgtcatcgggccctggatacaaaccaagatggaggagattggtcgtatc tctatcgagatgcacggaaccctggaggatcagctgacccacctccgccaatatgagaag aacatcgtcaactacaagccaaagatcgaccaattggagggagaccaccagctgatccag gaagctctcatcttcgacaacaagcacaccaactacaccatggagcatatccgtgtgggc tgggagcagctcctcaccaccatcgccagaaccatcaacgagatcgagaaccagattctg acgcgggatgccaagggcatcagccaggaccagatgaacgagttcagagcctccttcaac cacttcgacagggaccactcgggcactctgggggctgaggagttcaaggcctgcctgatc agcctgggcttcgatatagccaacgatgcacagggtgaagcggaattctctcgcatcatg agcatcgtggatcccaaccgggtgggcgtggtcacgttccagtccttcatagacttcatg tcccgggagacggccgacactgacaccgctgaccaggtcatggcctccttcaaggtcctg gctggggacaagaactacatcctggccgatgagcttcgtcgtgagttgcctcctgaccag gcagagtactgcatcgcccgcatggctccctacgccggccctgacgccatacccggtgcc ctcgactacatgtccttctccaccgcactctacggagagagtgacctctga

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