Coregonus clupeaformis (lake whitefish): 121544708
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Entry
121544708 CDS
T08357
Name
(RefSeq) neuronal PAS domain-containing protein 3-like
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121544708
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
121544708
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Gene cluster
GFIT
Motif
Pfam:
PAS_3
PAS_11
PAS
PAS_9
bHLH_HIF1A
PAS_4
Motif
Other DBs
NCBI-GeneID:
121544708
NCBI-ProteinID:
XP_041710719
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All DBs
Position
29:complement(18224709..18442607)
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AA seq
880 aa
AA seq
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MLPLPGAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLHMEGPPPNTSVKAIGDQRRR
TPSAVASEIFEPNLGSHILQSLDGFVFTLNKEGRFLYISETVSIYLGLSQVELTGSSVFD
YVHPGDHVEMAEQLGMKLPPGRGLLSQGTATEDGASSASSSSHAETPEPVESTSPTMLPP
DNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHVTGRLRIQMALTHSRSVPIQIMGMVVVA
HALPPPTINEVRIDCQMFVTRVNMDLNIVYCENRISDYMDLMPVDIVGKRCYQFIHAEDV
EGIRHSHLDLINKGQCVTKYYRWIQKNGGYIWIQSSATIAINAKNANEKNIIWVNYVLSN
PEYKDTPMDIAQLPNLPEKASESSETSDSESESKENSDNENSKWDGKGNQTENTEDPETD
SKKQQQGQSSSEQEMRRQEEGDSSSNPESQESEDDLEPSDCELETKEGRLGRLGDLHIKV
EHYGDRNGGVELHDSPSSSEEEEDDDDDDDYDSFKDRDSATETLAAPAASKQQKRKKRRK
KQKWDGSRSKRLCLSSATPSSGTMVHHTFGGDAPLLPPPSPASTSVLKIKTEMSEPINFD
NDSIIWNYPPNREISRNESPYSMTKPVPAHDTFPSSQPGSLQISIPDSVLTPPGTEGGGG
GGGTRKGVPPSFSGYSSAPSSASSAASLAPPSGSGSSSDPLSPPLSASPRDKQHGQSTPT
TTSSSLLYTSDLEALQRLQAGNVVLPLVHRVTGTLATTNTAASRVYTTGTIRYAPADVTL
AMQAGANLLPNNVAHAMNFVDVNGSPGFGIDPKTPMEMLYHHVHRLNMAGPFGGTVSGAS
LTQMPAANVFTTAEGLFSTLPFPVYSNGIHTTQTLEHEED
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctgcccggcgccattaccagccagctggacaaggcttccatcatccgcctc
accatcagttacctgaagatgagggacttcgccaaccagggggacccgccatggaatctg
cacatggaaggcccaccgcccaacacctccgtcaaagctataggagatcagcgaaggagg
actcccagtgcggtagcctcagagatcttcgagccaaacctcgggagccacatattgcag
tccctggatggatttgtatttacactaaacaaggagggaagatttttgtacatctctgag
acggtgtccatatacctggggctttcacaggtggaactgacaggaagtagtgtgtttgac
tacgtccaccctggtgatcatgtggaaatggcagagcaactgggcatgaagctgcccccg
ggccgaggcctcctctctcagggcaccgccaccgaggacggcgccagctctgcctcctcc
tcctcacacgcagagacccccgagccagtcgagtcgaccagccccaccatgctgccccca
gacaacactctagagcgctccttcttcatccgtatgaagtccacactgaccaagagaggc
gtccacatcaagtcttcaggctataaggtgatccatgttacaggcaggctgaggatccag
atggcgttgacccacagtcggtcggtacccattcagatcatgggcatggtggtggtagcc
cacgccctcccccctcccaccatcaacgaggtgcgcatagactgccagatgtttgtcacc
agggtcaacatggacctcaacattgtctactgtgagaatagaattagtgactacatggac
ctgatgccagtggacatcgtagggaagaggtgttaccagtttattcatgcggaggacgtg
gagggcatccggcacagccatttagacttgataaacaagggccagtgtgtgaccaagtac
taccgctggatccagaagaacggtgggtacatctggatccagtccagtgccaccatcgcc
atcaatgccaagaacgccaatgaaaagaacataatctgggtcaactacgtactcagtaat
ccagagtacaaggacacgcccatggacatcgcccagctgcccaaccttccagagaaagcc
tcagagtcttcagagacgtccgactctgagtccgagtccaaggagaactctgacaacgag
aactccaagtgggacgggaaggggaaccagactgagaacacagaggacccggaaacagac
agtaaaaagcagcagcagggccagtcgtcctcagagcaggagatgaggcgtcaggaggag
ggagacagctcctccaacccagagagccaggagagcgaggacgatctggagcccagcgac
tgcgagttggagaccaaggagggcaggctgggccggttgggggacctgcacatcaaggtg
gagcactacggagacagaaacggaggggtggagctgcacgactcgccgtcctcctctgaa
gaagaggaagatgatgatgatgatgatgattacgacagctttaaagaccgtgatagcgcc
accgagactctcgccgcccccgctgccagtaagcagcagaagcgtaagaagaggaggaaa
aagcagaaatgggacggtagtcgttctaaacgcctgtgcctctcctctgccacccccagc
tctggcaccatggtccaccacaccttcggtggggacgcccccctcctgccacccccctcc
cctgccagtacctctgtgcttaagatcaaaacggaaatgtccgagcccatcaacttcgac
aatgacagcatcatctggaactacccacccaacagagagatctccaggaacgagtctccc
tacagcatgacaaagcccgtcccagcccacgataccttcccctcctcgcagcctggcagt
ctgcagatctccatcccagattcagtgctcactcccccaggaacagagggaggcggtggg
ggcggaggtaccaggaagggcgtacccccctccttcagcggttatagcagtgccccatcc
tcggcctccagcgctgccagcctggcccctccctccggctctgggtcctcctccgacccc
ctgtccccgcccctctcggcctcgccgcgcgacaaacagcatggtcagagcacccccacc
accaccagctcctccctgctgtacaccagcgacctggaggccctgcagaggctgcaggcc
gggaacgtagtgcttccactggtccaccgggtcaccggcaccctcgccacgaccaacact
gccgcctcacgggtctacaccactggcaccatccgctacgcccccgccgacgtcaccctg
gccatgcaggcaggcgccaacctgctgcccaacaacgttgcccacgctatgaactttgtg
gatgtcaacggtagccccggcttcggcatcgaccccaagacgcccatggagatgctgtat
catcacgtccaccggctcaacatggctggcccctttgggggtaccgtgtccggcgccagc
ctcacccagatgccagcagccaatgtattcaccacggcagagggactgttctccactctt
ccattccctgtctacagtaacgggatacacaccacacaaacactggagcacgaagaagat
taa
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