Coregonus clupeaformis (lake whitefish): 121544738
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Entry
121544738 CDS
T08357
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121544738
03015 mRNA surveillance pathway
121544738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121544738
03041 Spliceosome [BR:
cclu03041
]
121544738
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121544738
Spliceosome [BR:
cclu03041
]
Complex C
Other components
EJC/TREX
121544738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
121544738
NCBI-ProteinID:
XP_041710780
LinkDB
All DBs
Position
29:complement(13919632..13928301)
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AA seq
695 aa
AA seq
DB search
MAVAVGSLQAQLEKAKESLKNVDDNIRKLTGRDPNELRPGQARRPTIPGVGGGRGRGINL
LRRGLSDIGGGPGGPPAKQRDIEGALLRLAGDQRARRDSRHDSDAEDDDDVKKPALQSSV
VATSKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESNVATDRQKKRIEIEQK
LEVQAEQERKKVEGERRELFDERRAKQTELRLLEQKVELAYLQEEWNVHNTKMVKYIRSK
TKPPIFYLPGRMCSATQKLLDESQKKMNIMFEERREAFAEYLNKMEARPRRQSQRDNALV
KDLKKEDQEEGKPTGQVVKVTGNRFDVEMEDEATLEKEEGDEGVMRKEDRKKKPGEKVRE
QEPKKGENKADKREESEENGQDTRIVEFREVEEQMEVTAVVREAEWQVGDQGKKMEDSPV
MAGGEVGNEKKVEEPQQQVKVEKEKKRLQNQDPTAVSDDQEKSVEMQPTEDEPHTEVSIP
LHSEPNPSVEVSDGGSIAPEVQIPLLEAGTDPEPLTTEQSQEADQGAMKQTTDLQAAQDD
AAPKVLEPLCEERSRGCEKAKDNKGDGGGGGRNSSSSSSSSSGSSSSGSSGSSTGSSSRS
SSSSGSSSSSSSSRSRSRGRKDKKHRRKPSERERKKGGGEKSHKSSKCSGRESKGSKDKG
SKSDRKRTTSEGCRSGKRSSRGDRDRKSDRKEKRR
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcagtggggtctttgcaagcccagcttgagaaagctaaagagagtttgaaa
aatgttgacgataatattcgtaaattaactggccgggatcctaatgaattgagacctggc
caagctagaaggccaaccatcccaggcgttggaggaggtagggggcgaggaatcaacttg
ttaagacgtggactctccgacatcggcggtggacctggaggacccccagctaaacagagg
gatattgaaggggccctcctgaggctggccggtgaccagcgagcgaggagagattcacgc
catgacagtgacgctgaggatgatgacgatgtcaaaaagccagcgttgcagtcatcagta
gtagctacctccaaggaacgtacgcgtcgagacctgattcaggatcagaccatggatgag
aggggaaaacaaaggaatcgacgcatgtttggcctgttgatgggaacattacagaaattt
aagcaggaatctaatgtggcaacagatcggcaaaagaaacgcattgagattgaacaaaaa
ttggaagttcaagcagaacaagaacgcaagaaagtagagggcgaaagacgagagctcttt
gatgagaggcgtgccaagcagacagagctgagactgttggaacagaaagtggagcttgct
tacttgcaagaggagtggaatgtgcacaatacaaaaatggtcaagtacatccgctcaaag
accaagccacccatcttctatctgcctgggaggatgtgctcagccactcagaagctcttg
gacgagtcgcagaaaaaaatgaatattatgtttgaggagagacgcgaggcatttgccgag
tatctgaataagatggaggctcgccctcgacgccagtctcagagggacaacgctctggtt
aaggacctgaagaaagaagatcaagaggagggtaagcccacgggtcaggtagtcaaagtg
acaggtaaccggtttgatgtggagatggaggatgaggcaacactagagaaggaagagggg
gatgagggtgtaatgcgtaaggaggacagaaagaaaaagccaggagagaaagtcagggag
caggagcctaagaagggggagaataaggcagacaagagggaggagagtgaggaaaatggt
caagacactagaatagtagagttcagagaggtggaagagcagatggaggttactgcagtg
gtgagggaggctgagtggcaggtcggggatcagggtaagaagatggaggatagtccagtg
atggctgggggagaggtaggtaatgagaagaaagtagaagaaccgcagcaacaggttaag
gtagaaaaggaaaagaagcgccttcagaatcaggaccccacagctgtgtcagacgaccag
gagaaaagcgtcgaaatgcaaccaactgaagatgagccacatacagaagtgtccataccc
ctgcactcagagcccaaccctagtgtggaagtctctgatggaggatctatagcccctgag
gttcagatccccctgctggaggctggaacagatcctgagcctctcacaacagagcagagc
caagaggctgatcaaggcgccatgaagcagactactgatctccaggctgcccaggatgat
gctgcccccaaggtgctggagcctctgtgcgaggaaagaagcaggggatgtgaaaaggca
aaggacaataagggagatggtggtggtggcggcaggaacagcagtagctcctctagcagc
tcctctggctcctcgtccagcgggagctccggctcctctactggctcctccagcaggagc
agctcctccagcggcagctcctcttccagctcgtctagcaggagtcgcagccgggggagg
aaggacaagaagcataggaggaagccgtccgagagggagaggaagaagggaggaggtgag
aagagccataagtcatccaagtgcagtggtcgtgaatccaaaggttccaaagacaagggc
tctaagtctgacaggaagaggaccacctctgagggctgccggtcagggaagaggtcctct
cgcggtgacagggatcgcaagtctgataggaaggaaaaaagacgttaa
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