Coregonus clupeaformis (lake whitefish): 121544753
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Entry
121544753 CDS
T08357
Symbol
nrde2
Name
(RefSeq) nuclear exosome regulator NRDE2 isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121544753 (nrde2)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121544753 (nrde2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_14
Motif
Other DBs
NCBI-GeneID:
121544753
NCBI-ProteinID:
XP_041710805
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All DBs
Position
29:14280087..14313945
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AA seq
1177 aa
AA seq
DB search
MALFPAFAGLSNTKAENAPKELEWLSNQSFRTDDALSLHQRATEKANETQSAETSRLIIP
ERDDKNDVPSKKKKKKEKKKKKKKHKNKSGEPSPASSGSDSDTIYPSDLLKNAESTPPSE
EAQFQMEGSFVWLDDLQTPTDRPFCVDRRADRANWEYKSLYRGDIARYKRKGCSSLGLDL
RSQAVSWAESGPEKKRVDRRQRPNRYFSPNVRQLLRSDGKPTLPRSPPEGTTTALPFIPV
PSCLEGEAEGGGSALGQGSWVNPLGVYDSSTSLWLQGKGKAEQGKVEEQTSTPRDNAAAM
LSERVEDFNRRLRETPTDTHTWLQFVHFQDEVAGAPGVFGDISENETERRKRSVRATLEK
KVAILDRAVENNPSCVELKLERLRLCRELWEPAALLKEWKKLVFLHPNSAPLWRKYLLFT
QSHFSTFSVSKVNAVYGKCLSTLAAVQDGSMVSHQVLPGTDEHMLAIFLQQCHFLRQAGH
SEKAVCLFQGLLDFTFFKPDTVKDLPTRQQVEFFEPFWDSGEPRVGERGASGWRAWMTQQ
ERGGWLQPSEQDDEDDEDQEESEVKDKTWPKWRIWLDVETSREAIHWLPWRPDKTKGQSV
EDCEDPDRQVLFDDIGPSLIRLVRPDLQLRLLLSFLHFLGLPADTSCYSAPSWSLLLDDQ
ALLGDVHHPDSPLTSYDLPVPGVSPVGHMTSLQGARRGAGLCKQGEEFLDNVFQMVLPLF
SAQERAVLSLHWIQYEKLKVLRCVRGRNKRHVKFQGKRSKRLAKRLLKEPENRGRLSLWR
EYAHLEWLLGNLDEAHKVFDTALGLGVAGGLADPALCDLCLLYAQLEVEEAWRRGTGGAG
TTVTTAMSSPAVYILTKLAEGSSYAPFLGQLAPVAVLKARKAYEQAVVSSLPGLEEGAAG
QGHSKKPRRVKGLVGCYALFQYLTVGVDAADAVYSLARKRLEQHSSMSAQESSSSEVISD
IQTQSAVSDCEALAVQQAALLRYHTSTNVYPLSHIRLALTSALAHFASSAPLWQLYVQVE
NRYHSAGRARRFFHSLTKASASVMPRLFAISAEQQRKQLVDSVQRSNCYGDTLSTLPENG
LSNRIRSLFENAIATEHGVHCPLLWRMYMNFLVSEGKVEKGRGIFYKALQDVPWAKGLYM
DAVQLFPEHVQEFLDLMTEKELRLRVPMEEVDILLED
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggcgctatttccagcttttgcaggattatcaaatacaaaagcagagaatgcacctaaa
gagctagaatggctgagcaatcaaagtttccgtaccgacgacgctctctctcttcaccaa
cgagccactgagaaagccaacgaaacacaatcggcagaaacaagcagactcattatacca
gagagggacgataagaatgacgtcccatccaagaagaagaaaaagaaggagaagaagaag
aaaaagaaaaagcacaagaacaagagtggagaaccctccccagcaagcagtggctcagat
tcagatactatctaccccagtgacctcctaaaaaatgctgagagcactcctccgagtgag
gaggcgcagtttcagatggaggggtcttttgtgtggttggacgacctccagacccccacc
gatcggcccttctgcgtggacaggagagcagaccgtgccaactgggagtacaaatcactt
tacagaggagatatcgctaggtacaagaggaaaggctgttcctctctgggtttggacctg
cggtctcaggccgtgagctgggctgagtctggcccagagaagaagagagtggacaggaga
cagagacccaaccgctacttctcacccaacgtccgccagctgctgaggtctgatggcaaa
cccacgctgcctagatctccaccagagggcaccaccaccgccttacccttcatccctgtg
ccctcctgcctggaaggtgaggcagaggggggtggctctgccctgggccagggctcctgg
gtcaaccctctgggggtgtatgactcctccacctccctgtggctccaggggaaagggaag
gcggagcagggcaaggtagaggaacaaacttctactcccagggacaatgctgctgccatg
ctgtctgaacgggtggaggacttcaacaggaggctgagggaaacccccacggacacacac
acctggcttcagtttgtccacttccaggacgaggtagctggggcgcctggggtgtttggt
gacatctctgagaacgagacagagcggcggaagaggtcagtgcgggccacgctggagaag
aaggtagccattttggatcgagcagtggagaataaccccagctgcgtggaactgaagctg
gagcgactgcggctctgtagggagctgtgggagccggcagccctgctgaaggagtggaaa
aagcttgtgttcctgcaccccaacagcgcccccctgtggaggaagtaccttctgttcacg
cagagccacttcagcaccttctctgtgtcaaaggtcaacgcggtgtacgggaagtgtctg
agcacgctggcggcggtgcaggatgggagcatggtttctcaccaggtgctgccgggcact
gatgagcacatgctggccatcttcctccagcagtgtcatttcctcaggcaggccggccac
tcagagaaagctgtgtgtctgttccagggcctgctggacttcaccttcttcaagccagac
actgtcaaggacctacccaccagacaacaggtggagttctttgagccattctgggacagt
ggggagccccgtgtcggggagagaggggccagtggatggagagcctggatgacccagcag
gagagagggggctggctccaacccagtgaacaagatgatgaagatgatgaagatcaggaa
gaatcggaggtgaaggataagacatggcccaagtggaggatctggttggacgtggagaca
tcacgcgaggccatccattggctgccgtggaggccggacaaaaccaagggccaatcggtg
gaggactgtgaggacccggaccgacaggtgctgtttgatgacattgggccgtctttgatc
cggctggtccgcccagacctccagctgcgtcttcttctgtccttcctgcactttctgggt
ctgcctgctgacacttcctgttacagtgccccctcctggagcctgctgctggacgaccag
gctctgctgggggatgttcaccaccctgactcacctctgacctcctatgacctccctgtc
cctggggtcagccccgtgggtcacatgacctctctgcagggtgccaggaggggggcgggg
ctgtgtaagcagggggaggaatttctagacaacgtgttccagatggttctgcctctgttc
tctgctcaggagagagctgtcctctcactgcactggatccagtatgagaagctcaaggtg
ctgaggtgcgtgcgcggcaggaacaagaggcatgtgaaattccaggggaagaggagcaaa
cgcctggccaagcgcctgctgaaggagccagagaaccggggccgcctcagcctgtggagg
gagtatgcccacctggagtggctgctagggaatttggatgaggcccacaaggtgttcgac
acagccctgggactgggcgtggcaggagggctggcagaccctgccctgtgtgacctctgc
ctgctctacgcccagctggaggtagaggaggcctggcgaaggggtacgggcggagcaggg
acaactgttacgaccgccatgtcttcaccagcggtctatatcctcaccaagctagcagag
ggtagttcgtatgcccccttcttgggacagttggctccagtggccgttctgaaggccagg
aaggcctatgagcaggctgtggtgagctccctgcctgggctggaggagggggccgcgggg
caggggcactccaagaagcccaggcgggtcaaaggtctggtggggtgttacgccctgttc
cagtacctgactgtgggggtcgatgctgctgatgcagtctacagtctggccaggaagagg
ctggagcaacactccagtatgtcagcacaggagtcatctagcagtgaagttatcagtgac
atacagacacagagcgctgtctcagattgtgaggccctggctgtccagcaggcggcgctg
ctgcgctaccacaccagcaccaacgtgtacccacttagccatatcagactggcgctgacc
tcggccctggcccactttgcctctagcgcccccctgtggcagttgtacgtgcaggtggag
aaccgctaccacagcgccggcagggctcgacgcttcttccacagcttgaccaaggctagt
gccagtgtcatgccacgcctgttcgccatcagtgcagagcagcagaggaagcagctggtg
gactctgttcagaggtctaattgctatggcgacaccctctccaccctgccagagaacggc
ctgagcaaccgtatccgctcgctgtttgagaatgccatagcaacggagcacggggtccac
tgcccgttgctgtggaggatgtacatgaacttcctggtgtcagaggggaaggtggagaag
ggaagagggatcttctacaaggctcttcaggacgtcccatgggccaagggtttatacatg
gacgcggtgcagctcttccctgagcacgtgcaggagttcctggatctgatgacagagaag
gagctcagactgagggttcccatggaggaggtggacatactgctggaggactga
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