Coregonus clupeaformis (lake whitefish): 121544797
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Entry
121544797 CDS
T08357
Name
(RefSeq) gamma-aminobutyric acid receptor subunit beta-1
KO
K05181
gamma-aminobutyric acid receptor subunit beta
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04080
Neuroactive ligand-receptor interaction
cclu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121544797
04082 Neuroactive ligand signaling
121544797
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121544797
Ion channels [BR:
cclu04040
]
Ligand-gated channels
GABA-A
121544797
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Motif
Pfam:
Neur_chan_memb
Neur_chan_LBD
Motif
Other DBs
NCBI-GeneID:
121544797
NCBI-ProteinID:
XP_041710884
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Position
29:complement(19822657..19892392)
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AA seq
486 aa
AA seq
DB search
MCTALDRGRWGIFCIFLMVAMVCGAQSANEPSNMSFVKATVDKLLKGYDIRLRPDFGGAP
VDVGMSIDIASIDMVSEVNMDYTITMYFQQSWRDKRLSYTGIPLNLTLDNRVADSLWVPD
TYFINDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIE
SYGYTTDDIEFYWKGDNSVTGVENIELPQFSIIDYHIQSTKAVFATGSYPRLSLSFKLKR
NIGYFILQTYMPSTLITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIP
YVKAIDIYLMGCFVFVFLALLEYAFVNYIFFGRGPHLQKKVAEKAAQTNNENKSRLESNK
VQVDAHGNILLTSLEIRNEMGGMGGMAGMTGAEMIGALNDPRATMFSYDSASIQYRKPMA
SRDLYGRPALDRPVGHKKSRLRRRASQLKVKIPDLTDVNAIDKWSRVIFPIAFTFFNLVY
WLYYVH
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtgcacggctttagaccgcggacgctgggggattttttgtattttcctcatggtcgcc
atggtctgcggcgctcaaagcgccaacgagcctagcaacatgtcatttgtgaaagctacc
gtcgacaaactgctaaaggggtatgacattcgtctgaggcctgattttggaggtgcccct
gtggacgttggcatgagcatagatatcgccagtatcgacatggtttcggaagtcaacatg
gattacaccatcaccatgtacttccagcagtcctggagggacaagcgcttgtcctacaca
gggattcccctcaacctgacactggacaacagggtggccgactcgctctgggtccctgac
acctacttcatcaacgataagaagtcctttgtgcacggggtcacagtgaagaacagaatg
atccgactccatcctgacggaactgtgctctacggcctcaggatcactactactgcagct
tgcatgatggacttgcgtagatacccactggatgagcagaactgcaccctggagatcgag
agctatgggtacaccactgatgacatcgagttctactggaaaggtgataattcagtgact
ggggtggagaacatcgaactgccccaattctctattatagactaccacatccaatccaca
aaagcagtgtttgctacaggctcctacccgaggctctctctgagttttaagctgaagagg
aacattggctacttcatcctacagacctacatgccctcgaccctgatcaccatcctatcc
tgggtctccttctggatcaactatgatgcgtctgcggccagagtcgctttaggtataacc
actgtgctgaccatgaccaccataaacacacatttgagagagactttacccaaaatcccc
tacgtcaaggctatagacatctacctgatgggctgctttgtgttcgtcttcctcgccctg
ctggagtacgccttcgtcaactacatattcttcggacggggacctcacttgcagaaaaag
gtggcggagaaagcagctcaaaccaataacgaaaataagagccgactggagagtaacaaa
gtgcaggtggatgcccatggcaacatcctcctgaccagtctggagatccgtaacgagatg
ggcgggatgggtggcatggccgggatgaccggggctgagatgataggggctctcaacgac
ccgcgggccaccatgttctcctacgacagcgccagcatacagtaccgtaagcccatggcc
agccgagacctgtacggtcgaccagccctcgaccggcccgtcggccacaagaagagtcgt
ttgaggaggagggcgtcgcagctcaaagtcaagatccccgacctgacggacgtcaacgcc
atagacaagtggtcccgcgtcatcttccccatcgccttcaccttcttcaacctggtctac
tggctgtactacgtccactag
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