Coregonus clupeaformis (lake whitefish): 121544798
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Entry
121544798 CDS
T08357
Name
(RefSeq) gamma-aminobutyric acid receptor subunit alpha-2 isoform X1
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04080
Neuroactive ligand-receptor interaction
cclu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121544798
04082 Neuroactive ligand signaling
121544798
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121544798
Ion channels [BR:
cclu04040
]
Ligand-gated channels
GABA-A
121544798
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Gene cluster
GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
CytochromB561_N
Motif
Other DBs
NCBI-GeneID:
121544798
NCBI-ProteinID:
XP_041710885
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Position
29:19938157..19968029
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AA seq
488 aa
AA seq
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MPSALGCNFTSGFSEENHREIPRASQVWISAMRERWDLSHYLAVFFSMMVLWQSRSIVES
SAYASEAFKNNITLFTRILDRLLDGYDNRLRPGLGDRVTEVKTDIYVTSFGPVSDTDMEY
TVDVFFRQSWIDERLKFNGPMNILRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLR
IMEDGTLLYTMRLTVQAECPMHLEDFPMDSHSCPLKFGSYAYTMAEVTYIWTRNASASVE
VASDGSRLNQYHLQGQTVGTETIKSSTGEYTVMTAHFHLKRKIGYFVIQTYLPCIMTVIL
SQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSA
LIEFATVNYFTKRGWAWDGKSVVNVKQKKEVSAMKKNNAYAVAVANYAPNITKDQSGLPT
ISKSATSDPNKAKPEVKPEQNKKTFNSVSKIDRMSRIMFPVLFGGFNLVYWATYLNREPV
TKDMVPSK
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgcccagcgctcttgggtgcaactttacatctgggttctcagaagaaaatcatagggag
atacctcgcgctagtcaggtttggatttcagcaatgagagagcgatgggacttatcgcat
tatctagcggtgttcttctcgatgatggtactgtggcagtcaagatcaatagtggaatcg
tctgcatatgcttcagaggccttcaaaaacaacatcactctgttcacacggattttggac
cgccttctggatggctatgacaaccgattacgacctggacttggagatcgggtgacggag
gtgaagactgatatttatgtcacaagtttcggtccagtgtcagacacagacatggagtac
actgtggacgtgttcttccgtcagagctggattgacgagcggctgaagttcaacgggccc
atgaacatcctgcggctgaacaacctgatggccagtaagatctggacgcccgacactttc
ttccacaacgggaagaaatccgtggctcacaacatgaccatgcccaacaaactactccgg
atcatggaggatggaacactgctgtacactatgaggttaacagtccaggcagaatgtccc
atgcacctcgaagatttccctatggattcccactcctgtccactgaagtttggcagctat
gcctacacaatggccgaagtgacgtacatttggacccgaaacgcatcagcgtcagtggag
gtagcatcagatggatccagactgaaccagtatcaccttcaaggacaaactgtggggaca
gagaccattaaatcaagcactggtgaatacactgtcatgacggcccacttccacctgaag
aggaagattggctactttgtgatccagacctacctgccttgcatcatgactgtcatcctc
tcccaggtctccttctggctcaaccgagagtctgtacccgccagaactgtctttggtgtg
accactgtgctcactatgacgactctcagtattagtgcccgtaactctctgccgaaggtg
gcctacgccacggccatggattggttcatcgcggtgtgctacgccttcgtgttctctgcc
ctcatcgagtttgctaccgtcaactacttcaccaaaagaggctgggcctgggatggcaaa
agtgtggtcaacgtcaagcagaagaaggaggtgtccgccatgaagaagaacaacgcctat
gccgttgccgtggcaaactatgccccgaacatcaccaaggaccaaagtggtctgcccacc
atctccaagagtgccacctctgaccccaacaaggccaagccagaggtcaagccagagcag
aacaagaagactttcaacagcgtcagcaaaatcgaccgtatgtcccggattatgttcccc
gtgctcttcggtggtttcaacctggtctactgggccacctacctgaacagagaaccagtc
acaaaggacatggttccgtccaaatga
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