Coregonus clupeaformis (lake whitefish): 121544836
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Entry
121544836 CDS
T08357
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04137
Mitophagy - animal
cclu04140
Autophagy - animal
cclu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121544836
04137 Mitophagy - animal
121544836
04148 Efferocytosis
121544836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121544836
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
121544836
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
SPG4
Motif
Other DBs
NCBI-GeneID:
121544836
NCBI-ProteinID:
XP_045065059
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Position
29:complement(21808495..21854112)
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AA seq
769 aa
AA seq
DB search
MLSQEQARKPVVTFTSSRVSSERRKEKSRDAARYRRGKESEVFYELAQELPLPHSVTSNL
DKASIMRLAISYLRMRKLLSTDDEEEQKESELDSQLNGSYLKALEGFLMVLSEDGDIIYL
SENVNKCLGLAQFDLTGLSVFEYTHPCDHEELKEMLVHRTGISKKSKEPNTERSFFLRMK
CTLTSRGRTVNVKSATWKILHCSGHVRVHEAPAEQSPCGHKELPVSYLVLVCDPIPHPSN
IEAPLDTKTFLSRHTLDMKFTYCDERITELVGYDPEDLLNRSVYEYYHALDSEHLTKTHH
NLFAKGQVSTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIEEEKMVL
SLEQTEDMRPVKKELVEEEEEEEEKEEEEEESSEAEVSPVLLKEEKVDVSKLFTQAVEAQ
PLASLYDRLKEEPEALTLLAPAAGDTIISLDFSSPVSDILLKEVPLYNDVMLPSTSDKLA
LPLSLLPSSEQPLVPSTSVDTKAGPDSSRTPGSYSSNEPDSPLNFCFPMDSDISAAFKLD
LVERLFAIDTEPKTPFTSQAMEDLDLEMLAPYIPMDDDFQLRTLSPEEPLSCDPAQPLES
SPLCSPLHLTQDVHSYPGSPFSGPSIRTASPAPELAASSCSASLLTTRAPQMDREISLRT
LATQNTQRKRKLSLSQAVGIGALLQDPPGLGKKLKVSELSSSEAPSNRTILLLPTDLASR
LLGISSEGSGSPFTLPQLTRYDCEVNAPVVGRQHLLQGEELLRALDQVI
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgttgagtcaagaacaggcaagaaagccagttgtcacgtttacttcaagcagggtgagc
tcggagcggaggaaggagaagtcccgggatgcggcgcgataccggagggggaaggagtct
gaggtgttctacgagctggcccaggagctgcccctgccccacagtgtcacctccaacctg
gacaaggcttctatcatgagactggccatcagctatctgcgcatgaggaaactgctgagc
acagatgatgaggaggagcagaaggagagtgagctggactcccagctgaatggctcctat
ctgaaggctctggaaggcttcctcatggtgctgtctgaggacggggacattatctatctc
tctgagaatgtcaacaagtgcttgggtctggcacagtttgacctgacaggacttagtgtg
tttgagtacacacacccctgtgaccatgaggagctaaaggagatgctggtacacagaaca
gggatctctaaaaaatccaaggaaccaaacacagagcgcagcttcttcctgcggatgaaa
tgtaccctcaccagcagggggcgcactgtcaatgtcaaatcagccacctggaagattctc
cactgctcaggccatgtgcgagtccatgaagccccagctgagcagagcccctgtgggcac
aaggagctgcccgtctcctacctggtgttggtctgtgaccccatcccccacccctccaac
atcgaggctccgctggacaccaagaccttcctcagccgccacacactggacatgaagttc
acctactgtgacgagaggatcactgagctggtgggctatgatccagaggacctgttaaat
cgctctgtgtatgagtactaccatgccctggactcagaacacctgactaagacccatcac
aacttgtttgcgaagggccaggtgagcacaggccagtaccgcatgctggctaagagaggc
ggctttgtgtgggtggagactcaggccactgttatctacaacaacaagaactcccagccc
cagtgtgttgtctgtgtcaactttgtgctcagtggaattgaggaggagaagatggtgctg
tctctggagcagacggaggacatgagacctgtaaagaaggagctggtggaggaggaggag
gaggaggaggagaaggaggaagaagaggaggagagctctgaggcagaggtgtcccctgtg
ctcctgaaggaggagaaggtggatgtgagcaagctgttcacccaggcagttgaggcccag
cccctggccagcctgtacgacagactgaaggaggaaccagaggccctcacccttctggcc
ccggccgcaggagacaccatcatctccctggacttcagcagccccgtctctgacatcctg
ctgaaggaggtgcctctctacaacgatgtgatgctgccctccaccagtgataagctggcc
ctgccgctctctctgctgccctccagtgagcagcccctggtccccagcacctccgtggac
accaaggctggtccagactcctccaggaccccaggcagctacagctccaatgagcctgac
agcccgctgaacttctgtttcccaatggactctgacatcagtgctgcgtttaaactggac
ctggtggaaagactgtttgccatcgacacagagcccaagacgcctttcacctcacaggcc
atggaggacctggacctggagatgttggctccatacatccccatggatgatgacttccag
ctgcgcaccctgtccccagaggagccactgtcgtgtgacccagcccaacccctagagagc
tctcctctgtgctctcctctgcacctcacccaggatgtccacagctaccctggctccccc
tttagtggcccaagcatccggacagcttccccagccccggagctggcagctagctcttgc
tctgcctccttactcaccacgagggcgcctcagatggacagagagatctctctcaggaca
ctggccacccagaacacacagcgcaagagaaagttgtctctgtctcaggctgtcggaata
ggggcattgctccaggaccctcctgggctgggtaaaaagctcaaggtgtctgagctgagc
agctctgaggctccctccaacaggaccatactgctcctacctacagacctggcaagccgc
ctgcttggcatctcctcggagggaagcggctcacccttcacccttccacagctgacccgg
tatgactgtgaggttaacgcccccgtggtgggtcgccagcacctgctgcagggcgaggag
ctgctgcgtgccctggaccaagtcatctga
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