KEGG   Coregonus clupeaformis (lake whitefish): 121544839
Entry
121544839         CDS       T08357                                 
Name
(RefSeq) homeobox protein SIX4-like
  KO
K15615  homeobox protein SIX4
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cclu03000]
    121544839
Transcription factors [BR:cclu03000]
 Eukaryotic type
  Helix-turn-helix
   Homeo domain SINE
    121544839
Motif
Pfam: SIX1_SD Homeodomain Homeobox_KN
Other DBs
NCBI-GeneID: 121544839
NCBI-ProteinID: XP_041710966
LinkDB
Position
29:21991367..21998146
AA seq 678 aa
MYSSSGEVTISNNIKKENVKTDKRECIKLLALDTAELSMERATSNTDAVHSELLVSAASS
LAFSPEQVACVCEALQQGGNVDRLARFLWSLPQSDLLRGNESILKAQALVAFHQARYQEL
YSVLENHNFSPFNHSSLQELWYKARYTEAEKARGRPLGAVDKYRLRRKYPLPRTIWDGEE
TVYCFKERSRNALKDLYKQNRYPSPAEKRNLAKITGLSLTQVSNWFKNRRQRDRNPSEAQ
SKSESDGNHSTEDESSKGQEELSPRPLSNSSDGTMTHGVLPLQTGSLDCGVIIQQIGDIK
MPPGSSSGVLFNGNLVTSNPSTVFHNGGSSYLQAPSNILFNGLNLGVQPLAFNPLRPSGG
VLMGGSGVDMQMQAGQEKGLGGSSVDYASYSGCVNGAEVKLEGVHSMAAQNGDSSILTFS
SSSGALQLGGYSLVHVPSGVSDGEGTSLLNSNLGLPPLQLPSGSSSLSQGTIQMNNVAVS
SSSEDSYHHQHHQDKLGMAPMHPSTVLYNMGDAGQTSIKKEPLEGGGGGGVYSYHHGLHM
DPSGQLSYSSAPLTSEEVPSSQGSSSDVTTVSSSSPEPEVYTTLTVSTPLMVQTDPNGHQ
LQPGEYLRGHNPQPVPSSHLLGPGMNNNYMSVSENKVDASGGGVNEMVRVMCGEMEPGEE
KELAKLQTVQMEEDMADL
NT seq 2037 nt   +upstreamnt  +downstreamnt
atgtattcttcttcaggagaagtcacaatttcaaataacatcaagaaggaaaatgtaaag
acggacaagcgagagtgcatcaagcttctagcgctggatacggcggagttgtctatggag
cgcgcaacttcgaacactgatgcggtccacagtgaacttctggtgagcgcggcttcctcg
ctggcattctcccccgagcaagtggcgtgcgtctgcgaggctctgcagcagggaggcaat
gtggaccggctggccaggtttttatggtccttaccacagagtgacctgctacgtggcaac
gaaagcatcctgaaagcccaagctcttgtcgcttttcatcaggctcggtaccaggagctc
tacagtgttttggagaaccacaacttcagtccattcaatcactcttcgctgcaagagcta
tggtataaggcacggtacaccgaggcagagaaagcgcgggggagacccctgggcgccgtg
gataaatatcgcctgcggagaaagtacccactaccccggactatctgggacggggaagag
acagtatactgcttcaaagagcggtcccgcaacgcgctgaaagatctatacaagcagaat
agatacccctctccagccgagaaaagaaacctcgctaaaatcacgggactgtccttgacg
caggtcagcaactggttcaaaaacaggagacagagggacagaaacccgtccgaagcacaa
tcaaaaagtgaatctgatggcaaccacagcacagaggatgagtctagtaaagggcaggag
gagctctctccacgccccctctccaattcatctgacgggacgatgacccatggggtcctc
cccctgcagacagggtctctggactgtggggtaatcatccaacagattggggacatcaag
atgccccctggatccagcagcggggtgctcttcaatggaaacctagtgacaagtaacccc
tccactgtcttccataacggtggctcgtcttacctccaggcccccagcaacatcctgttc
aatgggctcaacctgggtgtccagcccctggccttcaaccccctgcggccctctgggggg
gtcctgatggggggctctggcgtggacatgcagatgcaggcaggccaggagaaggggctg
ggcggctccagtgtggactacgcctcctactccggctgtgtaaacggggcagaggtgaag
ctggagggggttcacagcatggcagctcaaaatggcgactcgtccatcctcacgttcagc
tcgtcctcaggggcgctccagctgggcggttacagtctggtccacgtgcccagcggcgta
tccgacggcgaagggacgtcactgctcaacagcaacttgggtcttcctcctctgcagctc
ccctctggctcctcatcactctcacaaggtacaatccaaatgaacaatgtagcagtcagt
tcttccagtgaggactcctaccaccaccagcaccatcaggacaagctgggcatggccccc
atgcaccccagcacggtgctctacaacatgggcgatgctggacagacctccatcaaaaag
gagcccctggagggaggtgggggcggtggggtgtactcctatcaccatggccttcacatg
gaccccagtgggcagctcagctactcctcagcccccctaacctcagaggaggtcccctcc
agccagggctcctcctctgacgtgacaacggtcagctcctccagtccagagcctgaggtc
tacaccaccctcaccgtcagcacccctctgatggtccaaacagaccctaacggccaccaa
ctccagcctggggagtacctcaggggccacaacccacagcctgtcccctcctcacacctg
ctgggccctggcatgaacaacaactacatgtctgtttcggagaacaaggtggacgctagt
ggtggtggggtgaatgagatggtgcgggtcatgtgtggggaaatggagccgggggaggag
aaggagctggccaaattacagacagtgcagatggaggaggacatggctgacctttaa

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