Coregonus clupeaformis (lake whitefish): 121544839
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Entry
121544839 CDS
T08357
Name
(RefSeq) homeobox protein SIX4-like
KO
K15615
homeobox protein SIX4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121544839
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
121544839
BRITE hierarchy
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
121544839
NCBI-ProteinID:
XP_041710966
LinkDB
All DBs
Position
29:21991367..21998146
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AA seq
678 aa
AA seq
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MYSSSGEVTISNNIKKENVKTDKRECIKLLALDTAELSMERATSNTDAVHSELLVSAASS
LAFSPEQVACVCEALQQGGNVDRLARFLWSLPQSDLLRGNESILKAQALVAFHQARYQEL
YSVLENHNFSPFNHSSLQELWYKARYTEAEKARGRPLGAVDKYRLRRKYPLPRTIWDGEE
TVYCFKERSRNALKDLYKQNRYPSPAEKRNLAKITGLSLTQVSNWFKNRRQRDRNPSEAQ
SKSESDGNHSTEDESSKGQEELSPRPLSNSSDGTMTHGVLPLQTGSLDCGVIIQQIGDIK
MPPGSSSGVLFNGNLVTSNPSTVFHNGGSSYLQAPSNILFNGLNLGVQPLAFNPLRPSGG
VLMGGSGVDMQMQAGQEKGLGGSSVDYASYSGCVNGAEVKLEGVHSMAAQNGDSSILTFS
SSSGALQLGGYSLVHVPSGVSDGEGTSLLNSNLGLPPLQLPSGSSSLSQGTIQMNNVAVS
SSSEDSYHHQHHQDKLGMAPMHPSTVLYNMGDAGQTSIKKEPLEGGGGGGVYSYHHGLHM
DPSGQLSYSSAPLTSEEVPSSQGSSSDVTTVSSSSPEPEVYTTLTVSTPLMVQTDPNGHQ
LQPGEYLRGHNPQPVPSSHLLGPGMNNNYMSVSENKVDASGGGVNEMVRVMCGEMEPGEE
KELAKLQTVQMEEDMADL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgtattcttcttcaggagaagtcacaatttcaaataacatcaagaaggaaaatgtaaag
acggacaagcgagagtgcatcaagcttctagcgctggatacggcggagttgtctatggag
cgcgcaacttcgaacactgatgcggtccacagtgaacttctggtgagcgcggcttcctcg
ctggcattctcccccgagcaagtggcgtgcgtctgcgaggctctgcagcagggaggcaat
gtggaccggctggccaggtttttatggtccttaccacagagtgacctgctacgtggcaac
gaaagcatcctgaaagcccaagctcttgtcgcttttcatcaggctcggtaccaggagctc
tacagtgttttggagaaccacaacttcagtccattcaatcactcttcgctgcaagagcta
tggtataaggcacggtacaccgaggcagagaaagcgcgggggagacccctgggcgccgtg
gataaatatcgcctgcggagaaagtacccactaccccggactatctgggacggggaagag
acagtatactgcttcaaagagcggtcccgcaacgcgctgaaagatctatacaagcagaat
agatacccctctccagccgagaaaagaaacctcgctaaaatcacgggactgtccttgacg
caggtcagcaactggttcaaaaacaggagacagagggacagaaacccgtccgaagcacaa
tcaaaaagtgaatctgatggcaaccacagcacagaggatgagtctagtaaagggcaggag
gagctctctccacgccccctctccaattcatctgacgggacgatgacccatggggtcctc
cccctgcagacagggtctctggactgtggggtaatcatccaacagattggggacatcaag
atgccccctggatccagcagcggggtgctcttcaatggaaacctagtgacaagtaacccc
tccactgtcttccataacggtggctcgtcttacctccaggcccccagcaacatcctgttc
aatgggctcaacctgggtgtccagcccctggccttcaaccccctgcggccctctgggggg
gtcctgatggggggctctggcgtggacatgcagatgcaggcaggccaggagaaggggctg
ggcggctccagtgtggactacgcctcctactccggctgtgtaaacggggcagaggtgaag
ctggagggggttcacagcatggcagctcaaaatggcgactcgtccatcctcacgttcagc
tcgtcctcaggggcgctccagctgggcggttacagtctggtccacgtgcccagcggcgta
tccgacggcgaagggacgtcactgctcaacagcaacttgggtcttcctcctctgcagctc
ccctctggctcctcatcactctcacaaggtacaatccaaatgaacaatgtagcagtcagt
tcttccagtgaggactcctaccaccaccagcaccatcaggacaagctgggcatggccccc
atgcaccccagcacggtgctctacaacatgggcgatgctggacagacctccatcaaaaag
gagcccctggagggaggtgggggcggtggggtgtactcctatcaccatggccttcacatg
gaccccagtgggcagctcagctactcctcagcccccctaacctcagaggaggtcccctcc
agccagggctcctcctctgacgtgacaacggtcagctcctccagtccagagcctgaggtc
tacaccaccctcaccgtcagcacccctctgatggtccaaacagaccctaacggccaccaa
ctccagcctggggagtacctcaggggccacaacccacagcctgtcccctcctcacacctg
ctgggccctggcatgaacaacaactacatgtctgtttcggagaacaaggtggacgctagt
ggtggtggggtgaatgagatggtgcgggtcatgtgtggggaaatggagccgggggaggag
aaggagctggccaaattacagacagtgcagatggaggaggacatggctgacctttaa
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