Coregonus clupeaformis (lake whitefish): 121544841
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Entry
121544841 CDS
T08357
Name
(RefSeq) homeobox protein six1b
KO
K15614
homeobox protein SIX1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121544841
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
121544841
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeobox_KN
Homeodomain
HTH_3
YdaS_toxin
HTH_72
Phage_mat-A
Motif
Other DBs
NCBI-GeneID:
121544841
NCBI-ProteinID:
XP_041710969
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Position
29:22004471..22007095
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AA seq
284 aa
AA seq
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MSILPSFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHR
GNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRT
IWDGEETSYCFKEKSRGVLREWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR
AAEAKERENSENNNSGNNKQNQLSPLDGGKSLMSSSEDEFSPPQSPDQNSLLLLQGNMSH
PGVSSYPMTGLGGAQALHGMHGHPHQLQDSLLGPLTSSLVDLGS
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatactaccttcgtttgggtttacccaggaacaagtcgcctgcgtctgcgaggtc
ctgcaacaaggagggaacctggagaggctcggtcgttttctctggtctctcccagcgtgt
gaccacctccacaagaatgaaagtgtactgaaagcaaaggcagtggtcgccttccaccga
gggaacttcagagagctctataagatcctggagagccaccagttttccccgcacaaccat
cccaagctgcagcagctgtggctgaaagcgcactacgtggaggcggaaaaattgcgcggc
cgaccgcttggagccgtggggaagtatagggtccgcaggaaattccctctgccccgcacg
atctgggacggcgaggagaccagctattgctttaaggagaagtcaaggggtgttctgaga
gagtggtacacgcataacccctatccctccccgcgagagaaaagggagctggccgaggcc
acgggactgaccactacgcaggtcagcaattggttcaaaaacagacgccagagagacaga
gccgcagaagctaaagaaagagagaacagcgaaaacaataactccggcaacaacaaacag
aaccagctgtctcccctcgacggcggcaagtcgctcatgtccagctcggaagatgagttc
tctccaccacaaagccctgatcagaactctttgcttttgctccagggaaatatgagtcac
cccggcgtctcctcttaccctatgacgggcctcggtggcgcacaggcgctgcacggaatg
cacggacacccgcaccaactccaagactcgttgctgggacctctaacatcgagccttgtg
gatctaggttcctaa
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