Coregonus clupeaformis (lake whitefish): 121545022
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Entry
121545022 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121545022
03041 Spliceosome [BR:
cclu03041
]
121545022
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121545022
Spliceosome [BR:
cclu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
121545022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
Motif
Other DBs
NCBI-GeneID:
121545022
NCBI-ProteinID:
XP_041711283
LinkDB
All DBs
Position
29:30369194..30406562
Genome browser
AA seq
1453 aa
AA seq
DB search
MEAVKAFNGELYSLNEYKPPISKAKMTNITKSAIKAIKYYKHVVQGVEKFVQKCKPEYKV
PGLYVMDSIVRQSRHQFGQDKDVFAPRFSKNIIGTFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGLPPPSVTPVMTSRDAQVNNTTPGTPATPATPANIVSSLPDWAS
QFSNTDTVAAVAQILQSPHGQQLQQLVQSLQLQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAASANPMQLNPLEQRISSFNKKMLGHFDFGNDSERSEDSKKDAHSSQMPMVSDSIFHQ
LAEQLQQQNLEQFQKQLMEHQQKSMNIEGQDGIFGSESSAMPQQSSSQSQHPAPQNKMDD
SIDNQQQDMDLDDGPEMEEERFEPEDKKSKMVDTWSRTRSRSRSRSPRKRRSRSRSGSRK
RKHRKRSRSRSRERKRKSSRSYSSERQAREREKERQKKGLPPIRSKFLSVCSTTLWVGQV
DKKASQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSFKIVSKVI
KIAWALNKGVKQEYKQFWDMDLGVTYIPWEKVKLDDLDGFAEGGMIDQETVNAEWEAAKN
APEPMKEAVSQAVSVEPIAATNTQQTQEEAFSQQVSMMPVQLPVRQAVPAVGLVPPSFPV
SMAMPPPGYGPLPPFLRAGFNASQPPPGFMQAAGVPQQAGMGSAPTSLVPASMSQAQDSM
KDSPYGATIPGSFMPSALPGQGVFNQLQPGVQTQQGANDKTGQSADGMDAAAELVLQGMQ
NAMSRGMGLLGMHPSASLTHPLHQQGLPGQRMPGLMPLDLRPTMLQGSGARFPLLMQQGL
SQQSLLEASLHAQARARAASQMERFNRAEEAFNRGPNPPNESMSKAEDEPSSAADDSQQG
GDQDYRFPPPQEKQSTGLLRTPPLEHRESMGIGGGGAGGGGMGGGRPALLQTPVRETARD
SVVGRLQALAGFTPQTQSRWGPPRGDFDERDMRGSPAGVSKGFQEERPGSNQGQNFPNRF
ENQNRVGSAGGVGGGVCAGGPGGGGVVGGPAWSRGGVDAAAPFADADMPQDLDECRRPWD
RQQRDRDFDFRKEMNGNRRERDSHEKERDRERERDRGRERGNREREQERDREREREKERE
KERERDRNKRGAWTPLLPLPQPLLPTPTLTPTLSLTQGKPQALLQLQSKLQPKPGLLTKP
GLLQTPTLLTRSTSQVPTKSLLQAPSQSPPKASPQSNQFPTQAKNEALPGPEPQAEFQTQ
SSQNQSPPQNHASLQAQSPPPAHSPFQTKSPPQAQSSSRARAQSPPQALSPPQAQSPPQV
SPQAPSIPDEITDTQGEPEKPQEEPIKEPEPMVEPPSQWVNGTGSRMDTDAVAEPTPTLS
PTPAPSMSLVLTHSPVEPQCLPEPLDQQQPPQHATSSCSSTKDVDNGLSEPMEEAEKQPV
VEKTDTEGTIITQ
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtcaaagcattcaacggcgagctctactcgctgaatgagtacaagcctcca
atctccaaggcgaaaatgaccaatattaccaagtctgcaataaaagctataaaatactac
aaacatgttgtccagggcgtggaaaagtttgttcagaaatgcaagccagagtacaaggtc
ccaggcctgtatgtcatggactccatcgtgcggcagtcacggcaccagtttggccaggac
aaggatgtgttcgccccgcgcttcagcaaaaacatcatcggaaccttccaacatctctac
cgctgcccctcagatgacaagagtaagattgtcagggtcctcaacctgtggcagaagaac
gcagtcttcaagagtgacatcatccagccgctgctggacatggctgcaggactgccccct
cccagtgtcacccctgtcatgaccagcagggatgctcaagtcaacaacactacgcctggt
accccagcgaccccggccaccccagccaacatcgtatccagtctgcctgactgggcgtct
cagttctccaacacagacactgtagctgctgtagcacagatcctgcagagtccacacggc
caacagctccagcagctggtgcagagtctgcagctgcagcagcagaagccccagccgtct
ctgctacaggcgctggatgcaggactggtggtccagctgcaggctctgacggcccagctc
actgcagccgcctcagccaatcccatgcagctcaaccccctggagcagaggatctcctcc
ttcaacaagaaaatgttgggtcattttgactttgggaacgattccgaacgctctgaagac
tccaaaaaggacgcccattcatcgcagatgccgatggtgtctgactccatcttccaccag
ctggctgagcagctgcagcagcagaacctggagcagtttcagaagcagctcatggagcac
cagcagaagtccatgaacatagaggggcaggatggaatatttgggtctgagagctcggcc
atgccccaacagagcagcagccaatcacagcaccctgcgccacaaaacaagatggatgac
tccattgacaaccagcagcaggacatggacctggatgacgggccagagatggaggaagag
cgcttcgaaccagaggacaagaagtccaagatggtcgacacgtggtcaagaacacggtct
aggtcacgatcgagatctcccaggaagagacggtccagatcacggtcaggctctcggaaa
cggaaacaccgtaagcggtcgcggtcacgctccagagagcggaagaggaagtcgtcgcgg
tcctactccagcgagagacaagcccgcgagcgagagaaagagcgtcagaagaaaggactg
cctcccatccgatccaagtttctcagtgtgtgcagcaccactttgtgggtgggacaggtg
gacaagaaggccagtcagcaggacctcaccaacctatttgaagagtttggtcagattgag
tctatcaatatgatccctcctcgcggctgtgcctacatctgtatggtccatagacaggat
gcctaccgcgccagacagaaactcagcactggttcattcaagatcgtctccaaggtcatc
aagattgcgtgggcgctgaataagggagtgaagcaagagtataagcagttctgggacatg
gacctgggggtcacctacataccctgggagaaggtcaagctggacgacctggacggcttt
gctgagggaggcatgatcgaccaggagactgtcaacgccgagtgggaagcagccaagaat
gcgccagagccaatgaaggaagcggtgagccaggctgtgagcgttgaacccatagcagcc
accaacacccaacagacccaggaagaggccttcagccaacaggtctccatgatgcccgta
cagctccctgtgcgccaggctgtccctgccgtgggtcttgtgccgccatccttccctgtt
tccatggcgatgcccccgccaggctacggccccctgccccccttcctcagagcagggttc
aacgcctcccagcctcctccaggtttcatgcaggcagcaggtgttcctcagcaagcaggc
atgggctcagctcctacatctctggtgccggcctccatgtcacaggctcaggacagcatg
aaggactccccatacggagccactatcccagggagcttcatgccttctgccctccctgga
caaggggtcttcaaccagcttcaacccggagtccagacgcagcaaggagccaatgacaag
acgggccaatctgctgacggcatggatgccgctgcagagttagtactgcaaggtatgcag
aatgcaatgagtcgtggtatgggtcttctggggatgcacccctcagcctcccttacccac
cccctgcaccagcagggcctgccaggccagaggatgcctgggctgatgccgctggacctc
cggcctactatgctccagggatctggggcccgcttccccctcctgatgcagcagggcctg
tctcaacagagcctcctggaagcgtccctccatgcccaggcccgggccagagcggcctcc
cagatggaacgcttcaacagggccgaggaggccttcaaccgggggcccaaccccccaaac
gaaagcatgtccaaggctgaggacgagccttcctctgcagctgacgacagccagcagggg
ggggaccaagactaccgcttccctccgccccaggagaagcagagcacaggcctgctgagg
acccctccactggagcacagagagtccatgggtataggtggtggaggagctggtggtggg
ggtatgggcggaggcagacctgccctgctccagaccccagtgagagaaacagctagagac
agcgtggtaggacggcttcaggccctcgccggcttcaccccccagacccagagtcgctgg
gggccacccagaggggactttgatgagcgtgacatgcggggctcaccggccggggtctcc
aagggcttccaggaagagcgccctggctccaaccaggggcagaacttccccaaccgcttt
gagaaccagaaccgcgttggatcagcaggaggggtaggaggaggagtatgtgctggtggt
cctggtggcggtggtgttgtagggggcccagcgtggagtcgtggtggagttgatgctgca
gcaccgttcgctgatgctgacatgccccaggacttggatgagtgccggcgcccttgggac
aggcagcaacgggacagggactttgacttcaggaaggagatgaatggcaaccgccgtgag
agagacagccatgagaaggagagggaccgcgagagagaaagggaccgtggccgtgagcgt
ggcaaccgtgaacgagagcaggagcgtgaccgggagagagagcgagaaaaggagagggag
aaggaacgtgagcgggaccgtaacaagcgtggagcctggacaccccttctccctctacca
caacccctgctccctactcctaccctgaccccaaccctctccctgacccaaggcaaacct
caggccctgctgcaactacagtccaagcttcaacctaaacctggactcctaactaaaccg
ggtctgcttcaaactccaactctcctaactcggtcaacatctcaagtcccaaccaagtct
cttcttcaagccccatcccagtctccacctaaagcttcaccccagtccaaccagtttcca
actcaagccaagaatgaagccctccccggtcctgagccccaggcagagttccagacccaa
tcctctcagaaccagtcaccaccccaaaaccatgcttcccttcaggcccagtcgccgccc
cctgcccattcccctttccagacaaagtcccctccccaggcccagtcatcatcacgggca
cgtgcacagtcaccaccccaggccctgtccccgccacaggcccagtcgccaccccaggtg
tccccacaggcccccagcatccctgatgagatcactgacacccagggggagccagagaaa
cctcaggaagaacctataaaagaacctgaacccatggtggaacctccatctcagtgggtc
aatgggacagggtcgaggatggacactgacgcagtggctgagcccacccctaccctgtcc
cccactcctgccccctcaatgtcactggtcctcacacacagccctgttgaaccccaatgc
ctgccggagcccctggaccagcagcaacccccgcagcatgccacctcctcttgctcctcc
acaaaggatgtagacaatggactgagtgagccgatggaggaagctgagaaacagccagtg
gtagagaaaacagacactgaggggacaatcatcactcagtag
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