Coregonus clupeaformis (lake whitefish): 121545078
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Entry
121545078 CDS
T08357
Name
(RefSeq) homeobox-containing protein 1 isoform X1
KO
K24885
homeobox-containing protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121545078
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
121545078
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
HTH_31
HTH_26
HTH_24
DUF494
HTH_NDX
Motif
Other DBs
NCBI-GeneID:
121545078
NCBI-ProteinID:
XP_041711381
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Position
29:36989603..37015593
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AA seq
562 aa
AA seq
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MSQFTDEPRFTIEQIDLLQRLRRTGMTKPEILHALDTLDRLDRQHGHKFGRRPQTQLQPA
DQGPTSNSNANTMSSSSSNNVVASSSTSTTATQTGYRGNGSGESGLSPSPSNNYDMSPPP
LAVVSAPVAMAAVAQNGCGVGGGGEMVPMTNGKLSPPRFPVSAVSGGVTGRGYGFEASEE
ELDVDDKVEELMRRDSAIIKEEIKVFLGNRRISQAVVAQVTGISQSRISHWLLQQGSDLS
EQKKRAFYRWYQLEKTTPGATLTMRPAPMSLEDVVEWRQTLPPISSTPGSFRLRRGSRFT
WRKECLAVMESYFNDNQYPDEAKREEIANACNAVIQKPGENQQEETWRNERGKKLSDLEK
VTSLKVYNWFANRRKEIKRRANIEAAILESHGIDVQSPGGHSNSDDIDGNDFPDQGCEVP
LFEKRAVTRPFSLSRLDLSSPTQVPTLLPSWLAAWPGSGRGGLAAQRASSLIGRSLLSGV
GLAQGAGMEGSRLTGVSWSPPSLQDDDSTNHSNALEHQDPIALAVEMAAVNHSILALATQ
AGGGLALGGTESDIKTEVLDND
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagttcacagatgagcctcgcttcaccatcgagcagattgacctgctccagcgg
ctgaggaggacgggcatgaccaagccagagatcctccatgccctggacaccctggacaga
ctggaccgccagcatggacacaagtttggacgccgtccccagacgcagctccagcctgcc
gatcagggaccgacgtccaacagcaatgctaatacgatgtcttcttcctcgtccaataac
gttgtggcgtcctcatcgacgtctacgaccgccacacagactggttaccgggggaatggg
agtggtgagagtggtctgtcgccatcacctagcaacaactatgatatgtcaccgccccct
ctggcggttgtatctgcccctgttgctatggcagctgtggctcagaacgggtgtggggtt
ggtggcggtggcgagatggttcccatgacgaacggaaagctgtctccaccacggtttcct
gtcagtgcggttagtggtggtgtgacggggagaggctacgggtttgaggccagcgaggag
gaactagacgtggacgacaaagtggaggaactcatgagaagggacagtgccataatcaag
gaggagatcaaggtgttcctggggaacaggcgcatctctcaggccgtggtggctcaggtc
acaggtatcagtcagagtcgtatctcccactggctgctccagcagggctcggacctcagt
gaacagaagaagagggccttctaccgctggtatcagttggagaagaccacccccggtgcc
actctgacgatgcggcccgcccccatgtctctggaggatgtggttgagtggcggcagact
ctgccccctataagctccacccccgggagcttccgtctgcgccgaggcagtcgcttcacc
tggaggaaagaatgtctggctgtgatggagagttacttcaatgacaaccagtaccctgat
gaagctaaaagagaggagatcgctaacgcctgcaacgctgtcatccagaaaccaggtgag
aaccagcaggaggaaacatggagaaacgaaagagggaagaagctgtctgatctggagaaa
gtcacgtctctgaaggtctacaactggttcgccaaccgccgcaaggagatcaagagacgc
gccaacatagaagcagcaatcctggagagccatgggatcgacgtccagagtcctggagga
cactccaacagcgatgacattgacgggaatgacttccctgaccagggctgtgaagtccct
ctgtttgagaagagagcggttaccagacccttcagtctcagccgactagacctgtcctct
cccacacaggtgcccaccctgctgcccagctggctggcggcttggcccggctcgggtagg
gggggcttagccgcccagagggctagctctctgattggccgctccttgctctctggggtg
ggtcttgctcagggggcagggatggaaggttccagactgacgggtgtgtcctggtctccc
ccctccctccaggatgacgactccaccaatcacagcaatgccctggagcaccaggatccc
atcgccctcgccgtggagatggcggccgtcaatcacagcatcctcgccctggcaacacag
gcagggggaggattggccctgggtgggacagaaagtgacatcaaaacagaggtgctggac
aacgactag
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