Coregonus clupeaformis (lake whitefish): 121545168
Help
Entry
121545168 CDS
T08357
Name
(RefSeq) collagen alpha-1(XII) chain-like isoform X1
KO
K19467
matrilin
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
121545168
Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
Von Willebrand domain-containing proteins
VWA domain-containing proteins
121545168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Matrilin_ccoil
VWA_2
FXa_inhibition
cEGF
EGF_CA
hEGF
Plasmod_Pvs28
EGF
Peripla_BP_5
EGF_LRP2
EGF_3
Motif
Other DBs
NCBI-GeneID:
121545168
NCBI-ProteinID:
XP_041711546
LinkDB
All DBs
Position
29:complement(48741863..48751392)
Genome browser
AA seq
480 aa
AA seq
DB search
MTLLIRGLICCMLLLAMEVQGTYRLHGGYHPRQHHADTRILPPQTFQRSIQQQQPFQSAP
QGQQQIGNVQQPAQLSQNQNQRTIDLGVHGNNYRFNGYHYYHQPPRKWPPVMYLRPTAPP
PPPEQPVSTPSGTPTPIISAGTVTHCKSRPLDLVFIIDSSRSVRPAEFEKVKIFLADMVN
TLEVGSDATRVAVVNYASTVKIEFLLKTHFDKPGLKAALAHIESLAAGTMTGLAIKTAME
ETFTEESGSRLANKNIAKVAIIVTDGRPQDTVEEVAAAARAAGIEIYAVGVDRADMKSLR
LMASLPLDEHVFYVETYGVIEKLTSKFRETLCGVDACALGHDCDHICVKNNNSYTCKCRE
GYTLNADKKTCSRKDHKPLSGMCGDIQTEERELQEIASEPHSQHYFHSANFSTIDSIAHT
LKSKLCHKDAKEMSGNKLSEDACMCEAQIAFQMKMQSTIQELTSKLDDLSRIVTQVGRKR
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgacattgttaatccgaggactcatctgttgcatgttgttgcttgctatggaggtccaa
ggaacataccgacttcatggaggataccatcctcggcagcatcacgcagacacccgtatc
ctgccaccgcaaacgtttcagcggagcattcaacagcaacaaccatttcagagtgctcca
caaggacagcaacaaattgggaatgttcagcaaccagctcagttgtctcagaatcagaat
caaagaactattgatttgggagtacatggcaataattacaggtttaatggctatcactac
tatcaccagccacccaggaaatggccaccagtcatgtacctccggcccacagcaccaccc
cctccacctgaacagccggtcagtaccccaagcggcacccccactcccatcatcagtgct
ggcacagtaacccactgcaaaagccggcccctagatctggtgttcattatcgacagttcc
cgtagcgtgcgccccgcagaattcgagaaggtcaaaatattcctggctgacatggtcaac
acgctcgaggttggctcggacgccacgcgtgtggccgtcgtgaactacgctagcacagtg
aagatcgagttcctgctcaagacgcacttcgacaagccgggcctgaaggcagcgctggcc
cacatcgaatctctagcggctggcaccatgactggcctggctatcaagacggccatggag
gagaccttcaccgaggagtcaggctcccggctagccaacaagaacatcgccaaggtggcc
atcatcgtgaccgacggacggccccaggacacggtggaggaggtggccgcggcagcgagg
gcggcgggcatcgagatctacgcagtgggggtggacagggcggacatgaagtccctacgc
ctcatggccagtctgccactggacgaacacgtgttctatgtggagacctacggcgtcatc
gagaagctcacgtccaagttcagggaaaccctgtgtggtgtggatgcctgtgccttggga
cacgattgtgaccacatatgtgtcaagaacaacaactcgtacacctgcaagtgtcgagaa
ggctatacactgaatgcggacaagaaaacatgttcacgtaaggaccacaagcctctatcg
ggaatgtgtggagatatacaaacggaggagagagagctccaggagatagcctctgagccc
cacagccagcattactttcactcggccaactttagcaccatcgactccatagctcacacc
ttaaagagcaagttgtgccacaaggacgcaaaagagatgagtgggaataagctgagtgaa
gacgcgtgcatgtgtgaggctcagattgccttccagatgaagatgcagtccaccatacag
gagctgaccagcaaactagatgatttatcgaggatagtgacccaggttggacgaaagcgt
tga
DBGET
integrated database retrieval system
