Coregonus clupeaformis (lake whitefish): 121545285
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Entry
121545285 CDS
T08357
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1-B isoform X1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121545285
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
121545285
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
LRR_1
Ig_2
LRR_9
ig
LRR_Zer-1
Ig_C17orf99
LRRNT
LRR_RPS2
C2-set_2
V-set
Motif
Other DBs
NCBI-GeneID:
121545285
NCBI-ProteinID:
XP_041711644
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Position
28:complement(21916077..21932961)
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AA seq
623 aa
AA seq
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MTVLVSSRMVSGEAGGHSYLVACWQPILVLMLGTVLSGSTTGCPSRCECNAQERSVVCHR
RRLAAFPEGIPIETKLLDLSKNRLKSLGPEEFINYPQLEELQLNENNISSMEPGAFSNLV
SLRTLGLRNNQLKLIQLGVFTGLSNLTQLDISENRIVILLDYMFQELYNLKALEVGDNDL
VFISHRAFHGLSSLEQLTMERCNLTSVPTEALSHLHNLLSLRLRHLTVNAVRDYSFKRLY
RLRVLEISHWPYLDTMTSKCLYGLNITSLTITNCNLTAIPYQAIRHLGHLLFLNLSFNPI
HTVEGNKLHNLLRLQAFHLVGGRLVTIEPYSFRGLNHLRVLNVSSNNLSTLEESVFHSVG
NLETLALYDNPLACDCRLLWVFRRRWRLNFNRQQPACSLPEAVRGKEFKDFPDILPSDYF
TCQKSRIQDHKALQRHVDEGTTVHYTCQADGDPAPVIMWLSPKKQLITTKSVGRLSVSPE
GTLEVRYAQIQDNGTYLCIASNAAGNDTRPAHLHVHSYSPNWPHQPNKTFAFISNQPSED
GANGTLVQVPFPFDVKTLIIATTMGFISFLGVVLFCLVILFLWSRGKGNVKPNIEIEYVP
RKAEAGESSPTGEASRKFNMKMM
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgacggtcctggtaagcagtagaatggtgtccggggaggcaggtgggcacagctacctg
gtggcgtgctggcagcccatcctggtcctaatgctgggcaccgtcctctccggctccacc
accggctgcccgtcccgctgtgagtgtaatgctcaggaacgttccgtggtgtgccaccga
cgaaggctggccgcgtttcccgagggcatccccatcgagacgaaactactggacctcagc
aagaaccgtctgaaaagcctggggcctgaggagttcatcaactacccgcagctggaggag
ctgcagctcaatgaaaacaatatctcctccatggagcccggggcttttagcaaccttgtc
agcctgcggactctggggctacgcaacaaccagcttaagctaatccagttgggagtgttc
acaggcctcagcaacctcacccagctggacatcagtgagaacagaatcgtcatcctgctg
gactacatgttccaggagctgtacaatctgaaggctctggaagtcggcgataacgacctg
gtgttcatctctcaccgagcattccacggcctcagcagcctggagcagctgaccatggag
cgctgcaacctgacctcggtgcccacagaggccctgagccatctgcacaacctgctgtcg
ctgcgactccgccacctcaccgtcaatgctgtcagggattactccttcaagaggctctac
cgcctgagggtgttagagatctcccactggccctacctggacaccatgacctccaaatgc
ctgtacggactcaacatcacctccctgaccatcacaaactgtaacctcaccgccatccct
taccaggccatccgacaccttgggcaccttctctttctcaacttgtcttttaatcccatt
cacacggtggaggggaacaaactgcacaatctgctgaggctccaggccttccacttggta
ggagggagattagtcacaatcgagccctactccttccggggccttaaccacctccgagtc
ctcaacgtatccagcaataacctgagcaccctggaggaatccgtctttcactccgtgggg
aacctggagaccctggctctgtacgataacccactggcctgcgactgccgactgctctgg
gtcttccgccgccgctggaggctcaacttcaaccggcagcagcctgcctgctctttgcca
gaggccgtgcggggcaaggagttcaaagacttccccgacatcctcccctccgattacttc
acctgccagaagtccaggatccaagaccacaaggcactgcagaggcacgtggacgagggc
acaacggtccattacacatgccaggcggacggcgacccagcccccgtgatcatgtggctg
tcccccaagaagcagttaatcaccaccaagtccgtggggcgtctcagcgtgtcccccgag
ggcacgttagaggtgcgctatgcccagatccaggacaacggtacctacctgtgcatcgcc
agcaatgcggcagggaatgacaccaggcctgcccacctgcatgtgcacagctactctccc
aactggccgcatcagcccaacaagacgtttgccttcatctccaaccagcccagcgaggat
ggggccaatgggaccctggtccaggttcccttcccgtttgacgtgaagactctgatcatc
gccaccaccatgggatttatctcgttcctcggcgtcgtcctattctgtcttgtcatcctc
ttcctctggagcagagggaaaggcaacgtcaagccaaacatagagattgagtatgtaccc
cgtaaggcagaggcaggtgagagtagtccaaccggcgaggcgtcacgtaaattcaacatg
aaaatgatgtga
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