Coregonus clupeaformis (lake whitefish): 121545412
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Entry
121545412 CDS
T08357
Name
(RefSeq) slit homolog 3 protein isoform X1
KO
K06850
slit 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cclu00536
]
121545412
Glycosaminoglycan binding proteins [BR:
cclu00536
]
Heparan sulfate / Heparin
Axon guidance molecules
121545412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
EGF
Laminin_G_2
LRR_9
LRRNT
hEGF
Laminin_G_1
LRRCT
EGF_TEN
JAG1-like_EGF2
EGF_MSP1_1
LRR_NXF1-5
LRR_EndoS
EGF_Teneurin
EGF_DL_JAG
Motif
Other DBs
NCBI-GeneID:
121545412
NCBI-ProteinID:
XP_045064209
LinkDB
All DBs
Position
3:32802584..32997126
Genome browser
AA seq
1532 aa
AA seq
DB search
MLQSVQEKWTAYHWGIWVLMSGLLCSAAVNGCPHKCSCSGSHVDCQGQGFRSVPKGIPRN
AERLDLDRNNITRITKVDFSGIKNLRVLHLEDNQITVIERGAFQDLKQLERLRLNRNKLQ
VLPELLFQSTPKLGRLDLSENQIQAVPRKAFRGITTVKNLQLDSNHISCIEDGAFRALRD
LEILTLNNNNITLIPLSSFNHMPKLRTLRLHSNNLHCDCHLSWLSDWLRQRRGLAPFTQC
MAPASMRGLNIPDVQKKDFTCTGPAHAEPRTCIPQASVCPASCTCNNNIVDCRHKGLTEI
PANLPEGIVEIRLEQNLIKSIPAGAFVPYKKLKRIDLSKNHISDIAADAFTGLRSLTSLV
LYGNKIAEIPKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQSLNLLSLYDNKLQTISKG
LFAPLRSIKTLHLAQNPFMCDCHLKWLADYLFDNPIETSGARCSHPRRLANKRISQVKGK
KFRCTGTEDYRSRLSGECFQDLVCPEKCRCEGTVVDCSNLKLTKLPPHLPEHTTDLRLND
NEISILEAAGTFKKLPNLKKINLSNNKLRDIREGAFDGAGGVLEVLLTGNKLQALQGRMF
RGLTGLKTLMLRSNQIGCVDNTTFTGLSSVRLLSLYDNRISTIAQGAFTTLHSLSTINLL
SNPYVCDCHLAWLGLWLKKTRVVSGNPRCQKPAFLKEIPIQDVANPDFTCDGIEENVCFP
VSRCPELCTCSDTVVRCSNRGLRTLPKGIPKDTTELYMEGNLLMSIPKELSTLKQLSLVD
LSNNSISTVASMSFSNMTQLATLILSYNQIRCIQVHAFDGLKSLRLLTLHGNDLSTIPEG
AFNHLTSLSHLALGANPLYCNCELRWLSQWVKAGFKEPGIARCTGPPDMADRLLLTTPLN
RFQCKGPVDLNLMSKCAPCLAGPCLNNGTCTSDVSGSYHCTCLFGYKGQNCEIAVNACIS
FPCANGGTCHLMPDQVEQFSCTCPPGYEGLQCEVNPDDCEDNDCENNSTCVDGINNYTCV
CLPNYTADRYDMGKGDLCEEVVDHCMQGFDPCQHDSKCIPLTKGFRCECLPGYVGQHCEQ
DFNDCLENKCQHGAECVDAVNGYTCVCKEGFNGLFCENPPPMILLQTSPCDQSECQNGAQ
CLVVEGEPVCRCLPGFTGNKCHKIVTVHLLGKEAYLELPSAKIRNSAHISLQVATDKDNG
ILLYKEDHDPLALELYQGHIRIIYDIANYPPTTIYSVESVSDGLFHTVELLIQNHSLSLV
VDKGAPKSLGKLPRQPSVDYNTQLYIGGVPTAVMASGLRSGPDRSPQAFNGCIHNVRING
ELQDLGAAPRGMEGILPGCHSCSVCAQGACRQRGETGVSCECPPSRSGPLCDQKTAPSPC
QSSRCVHGLCVPKASSYICHCAEGYTGQYCDRREEPQACRGHQCGHGECRVTESGEPSCH
CQPGYTGPTCDAEPACQGEVVRELLKRHQPMKTCTSTSKIPRVECPRACDGGFCCAPSKS
RRRKVVFKCTDGTSYSEDMETTLECGCAKCPL
NT seq
4599 nt
NT seq
+upstream
nt +downstream
nt
atgctacagagtgtgcaggagaagtggacggcgtatcactgggggatatgggttctgatg
agcggattgctgtgctctgccgcggtgaatggatgtcctcacaaatgcagttgctctgga
tctcatgtggattgccagggtcaaggcttcaggtccgtgcctaaaggaatacctaggaac
gcggagcgtttggatttggacaggaataacatcaccaggatcactaaagtggacttttct
ggcatcaagaacctgcgagttcttcacctagaggacaaccagatcacagtgattgagagg
ggggcgttccaggacctcaaacagctagagagactgcgtctgaaccggaacaagctgcag
gttctcccagagctgctgttccagtccacacccaagcttggccgcctagacctcagtgag
aaccagatccaggcagttcctcgtaaggctttccgtgggatcacaactgtcaaaaacctg
caactggacagcaaccacatcagctgtatcgaagatggagccttccgagccctccgcgat
ctggagatactcaccctcaacaacaacaacatcaccctcatccctctgtccagcttcaac
cacatgcccaagctgcggactctgcgtctgcactctaacaatctgcactgcgactgccac
ctgtcctggttgtccgactggctgcggcagaggcgtggcctggcccccttcacccagtgc
atggcccccgccagcatgaggggcctcaacatccctgatgtccagaagaaagacttcacc
tgcacaggcccagctcatgcggagcctcgtacctgtattccccaggcgtcagtatgtccg
gcctcctgcacctgcaacaacaacatcgtggactgtcgccacaagggcctgacggagatc
ccagccaacctgcccgagggcatcgtagagattcgtctcgagcagaacctgatcaagagc
attcctgctggagccttcgttccatacaagaaactcaagaggatcgacctgagcaagaat
catatctctgatattgccgccgatgccttcactggcttacgctccctgacttcactggtc
ctgtacgggaacaagatagctgagattcctaagggactgtttgatgggcttgtctctctt
cagctactgctactgaacgctaacaagatcaactgtctgagagtgaacaccttccaggac
ctgcagagcctcaaccttctgtctctgtatgacaacaagctgcagaccatcagcaagggc
ctgttcgccccgctccgctccatcaagaccctccacctggctcagaaccctttcatgtgt
gactgccatctgaagtggctggctgactatctgtttgacaaccccattgagaccagtgga
gcccgctgtagccacccccgccgcctggccaacaaacgcatcagccaggtcaagggcaag
aagttccgctgcacaggtacagaggactaccgtagcagactgagtggggagtgtttccag
gacctggtgtgtccagagaagtgtcgctgtgagggcaccgtggtggactgctccaacctc
aaactgaccaaactgcctccacacctccccgagcacaccacagacctgcgcctgaacgac
aatgaaatctccatcctggaggccgcggggacctttaagaagctccccaacctgaagaag
attaaccttagcaacaacaagctgcgggatatccgtgagggggcctttgacggagctggg
ggggtcctggaggttctgctgactggcaacaagctgcaggcactgcagggacgcatgttt
agaggtctcactggactcaagacactgatgctgaggagtaaccagataggctgtgtggac
aacaccactttcacaggcctgagctctgtacgtctgctgtccctctacgacaaccggatc
tccaccatcgcccagggagccttcactacgctacactccctctcaaccattaacctgctg
tccaacccctatgtgtgtgactgccacctggcctggctgggtctgtggctgaagaagacc
agggttgtgagtgggaaccctcgctgccagaaacctgccttcctcaaggagatccccatc
caggatgtggctaaccctgactttacctgtgacggcattgaggagaatgtgtgttttccg
gtgtctcgctgccctgagttgtgcacatgctcagacacggtggtgcgctgcagtaaccgg
gggctgcgcactctgcccaaaggcatccccaaggacaccactgagctatacatggaagga
aaccttctgatgtccatcccgaaagaactgtccactcttaagcaactatctcttgtagac
ttaagcaacaacagcatcagcactgtggcctccatgtccttcagcaacatgactcagctc
gccactctgatcctgagttacaaccagattcgctgtatccaagtacacgcatttgatggg
cttaaatctctgcgtctcctgacgctccacggaaacgacctttcaactataccagaggga
gccttcaaccatttgacatctctttctcatctggctctgggtgccaaccccctgtattgt
aactgtgaactgcgctggctgtcccagtgggtgaaggctggcttcaaggagcctggcatc
gcccgctgtactggaccacctgacatggccgaccgcctgctgctcaccacgcccctcaac
cgcttccagtgcaaaggtccagtggatctgaatctgatgtcaaagtgtgccccctgtctt
gctggcccctgtctgaacaatggcacatgtaccagcgatgttagtggctcctaccactgc
acctgtctctttggctacaaaggacagaactgtgagatagccgtcaacgcctgcatcagt
ttcccctgtgccaacggagggacctgccacctgatgccagaccaagtggaacagtttagc
tgtacgtgtccacccggctacgagggtctacagtgtgaggtgaacccagatgactgtgag
gacaacgactgtgagaacaattccacctgtgtggacggtatcaacaactacacctgcgtc
tgcctccccaactacacagctgacagatatgatatgggaaaaggggacctatgtgaggag
gtggtggaccactgtatgcaaggcttcgacccctgccagcatgactccaagtgcatcccc
ctcaccaaaggcttcaggtgtgagtgcttgcccggctacgtgggccagcactgtgagcag
gacttcaacgactgtctggagaacaagtgtcagcacggggccgagtgtgtggacgctgtc
aacgggtacacctgcgtgtgtaaggagggctttaatggtctattctgcgagaaccctccc
cctatgatcctgctgcagaccagcccatgtgaccagtcagagtgtcagaatggtgcccag
tgtctagtggtggaaggggagcctgtgtgccgctgcctgccaggcttcactggaaacaag
tgccacaagatcgtcaccgtccacctgctgggcaaagaggcctacctggagttgcccagt
gccaagatacgcaactctgcccacatctccctacaggtggctacagataaggacaacggt
atcctgctctacaaggaggaccatgatcctctagctctggagctgtaccagggacacata
cgcatcatctacgacatcgctaactaccccccgaccaccatctacagtgttgagtctgtg
agtgacggtctattccacacggtggagctcctgattcagaaccactctctgagcctggtg
gtggacaagggagcccccaagagcctgggcaagctgccccgccagccctcagtcgactac
aacacacagctctacataggaggtgtgcccacagcggtaatggcgtccggcctgcgttca
ggtcccgaccgcagcccccaggccttcaacggctgcatccacaacgtcaggatcaacgga
gagctccaggatctgggggcagcgccgcgtgggatggagggcatcctgccaggctgccac
tcttgcagcgtgtgtgcccagggggcctgcagacagaggggggagacgggtgtgtcctgt
gagtgcccacccagccgcagcggacccctctgtgaccagaagaccgcccctagcccctgt
cagagcagcaggtgtgtccatgggctgtgtgtgcctaaggcgtcgtcctacatttgtcat
tgtgctgagggctacacagggcagtactgtgacaggagagaggagccccaagcttgtagg
ggacaccagtgtggacacggggagtgtagggtcacagagagcggggagccctcctgccat
tgccagccgggctacactggccctacctgtgacgcagaaccggcgtgccagggagaggtg
gtgcgtgagctgctgaagcgccaccagcccatgaagacgtgcacctccaccagtaagatc
ccccgggtggagtgtccccgcgcctgtgacggaggcttctgctgcgccccatccaagagc
cggaggcggaaagtggtcttcaagtgtaccgacgggacctcgtactctgaggacatggag
accaccctggagtgtggctgtgccaagtgcccgttgtaa
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