Coregonus clupeaformis (lake whitefish): 121545449 Help Entry 121545449         CDS       T08357                                  Name (RefSeq) collagen alpha-1(II) chain   KO K19719   collagen type II alpha Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu04510   Focal adhesion cclu04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:cclu00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     121545449  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     121545449  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:cclu00536]     121545449 Glycosaminoglycan binding proteins [BR:cclu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    121545449 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Motif Other DBs NCBI-GeneID:  121545449 NCBI-ProteinID:  XP_041711919 LinkDB All DBs Position Unknown AA seq 1420 aa AA seqDB search MFSFVDSRTVLLLVASQVVLLSIVRCQEEDDHVAIGAKGQKGEPGEIADVVGANGPAGPM GPPGEQGPRGAAGDKGDKGNVGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGGNFAAQMAG GFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPAGPLGPHGPP GPSGKPGSDGEAGKPGKDGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKGEGGAA GAKGEGGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPSGAP GFPGSPGAKGESGPTGARGAEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKGSAGAS GIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPAGPQGAPGPA GEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGSKGAPGDRGVPGVGGPKGGT GDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPQGARGQPGVMGFP GPKGANGEPGKAGEKGLVGRQGLIGLAGKDGETGAAGPLGPPGPAGERGEQGAAGPSGFQ GLPGPAGPPGEGGKPGDAGVPGEAGAAGATGPRGERGFPGERGGAGPQGLQGPRGLPGTP GSDGPKGAIGPAGGAGAQGPPGLQGMPGERGAGGISGAKGDRGDNGEKGPEGAPGKDGSR GLTGPIGPPGPAGPNGIKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFAGPPGADGQP GAKGELGEAGQKGDGGAPGPQGPSGAPGPVGPTGVSGPKGARGAQGAAGATGFPGAAGRV GSPGPNGNPGAAGPAGPAGKDGPKGVRGDAGTPGRQGDAGLRGAAGAPGEKGDAGEDGPP GPDGPSGPQGLGGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAGGDRGPPGPVGPP GLSGPAGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAPGPVGPLGKQ GDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQGLPGPP GSAGDQGAAGPAGPSGAKGPPGPVGPAGKDGSNGQPGPLGPPGPRGRSGETGPAGPPGNP GPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVDSTLKSLNNQ IENLRSPDGSQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCNMETGETCVY PSIANVPQKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDSTNAASIQLTFLRLLSTEASQ NLTYHCKNSVAYMDASTGNLKKGLLLQGSNEVEIRAEGNSRFTYSVVEDGCKKHTGQWGK TVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL NT seq 4263 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggattcacggactgttctgctactcgtagcatcccaagttgtttta ctatccattgtcagatgtcaggaagaggatgaccacgtggcgattggtgctaagggccag aaaggggaacccggcgagattgcagatgttgtaggagcaaatggaccagcaggccctatg ggccccccaggcgagcagggaccacgtggagcagccggagataagggtgataagggaaat gttggccccagaggtagagatggcgagcctggcacccccgggaaccccggaccccctggc ccacccggacctaacggacccccaggccttggcgggaactttgctgctcagatggctggt ggattcgatgagaaagctggaggcgcacagatgggagtgatgcaaggacctatgggccct atgggtccccgtggtccaccaggcccttctggagcccctggcccacaaggtttccaaggt aaccccggagagactggagagccaggcccagctggcccactgggaccccacggaccccct ggaccttctggcaaaccaggaagtgatggtgaggctggcaaacctggaaaggatggtgag cgtggacctgcaggacctcagggagctcgtggattccccggaactcctggtcttcctgga atcaaaggacacagaggtcaccctggtctggatggagctaagggagagggcggtgctgct ggagccaagggtgagggtggtgctcccggagagaacggcgcacctggaccaatgggacca cgtggtctgcctggcgagagaggccgtcccggaccttctggagctgctggtgcccgtggt aatgatggcttgcctggccctgctggtcctcccgggcctgttggaccttctggagcaccc ggtttccctggatccccaggagcaaagggagaatctggccccactggtgcccgtggagct gagggcgcacagggaccccgcggagaggctggcacacccggatctcctggacccgctggc gcctctggcaaccctggtactgatggtatccccggagctaaaggatctgctggcgcttct ggaattgctggtgcacctggtttcccaggaccccgtggcccccccggacctcagggagca acaggacctcttgggcccaagggacagtctggagaccccggtattcctggcttcaaagga gaggctggtcccaagggagagcttggccctgctggtccccaaggtgcccctggccctgct ggagaggagggcaagagaggagcaagaggagagcccggtgctgctggaccacttggacct cctggcgagagaggagctcccggtaaccgtggtttcccaggtcaggatggtcttgctggt tctaagggagcccctggtgaccgtggtgttcccggcgtgggtgggcctaagggaggcact ggtgaccctggccgcacaggagagcctggtcttcctggagccagaggtctcactggtcgc cctggagatgctggtcctcaaggcaaagttggtcctggtggtgctgctggtgaggacggt cgccccggcccacctggtcctcagggagcacgtggccagcctggtgtgatgggattcccc ggaccaaagggagccaatggtgagcctggcaaggcaggagagaagggtcttgtgggtcgt caaggtctgataggtctggctggtaaagatggtgagactggtgctgctggacctctcggc cctcctggacctgctggagagagaggagagcaaggagctgctggaccttcaggcttccag ggtctgcccggacctgctggccccccaggagagggaggcaagcctggtgatgcgggtgtt cctggagaggctggtgctgctggtgctactggacctagaggtgagcgtggcttccctggt gagaggggcggtgctggaccccagggtctgcagggacctcgtggacttcctggaactccc ggaagtgatggaccgaagggagcaattgggccagctggtggtgctggagctcagggaccc ccaggtctgcagggtatgccaggagagaggggagctggtggaatctctggagccaagggt gacagaggtgacaacggagagaaaggacctgagggcgctcctggaaaggacggttctaga ggtttgactggtcccattggtcctcctggccctgctggtcccaacggcataaagggtgag ggtggaccttctggcccaactggtgctgctggtgcccgtggtgctcctggtgaccgtggt gagggtggtcctcccgggcctgctggcttcgctgggcctcctggtgcagatggtcagcct ggagccaagggagagttgggcgaggctggacagaagggagatggtggtgcccctggacct caaggaccctctggggcacctggacctgtgggtcccactggtgtttctggacctaaagga gctcggggtgcccagggggctgctggtgctactggtttccctggtgctgctggaagagtt ggttctcccggtcctaatggtaaccctggtgctgctggccccgctggtcctgctggtaaa gacggtcctaagggagttcgaggtgacgctggcaccccaggaagacagggcgacgctggg ctgcgtggagctgctggagcccctggcgagaagggagacgctggagaggatggtccccct ggtcccgatggtccttcaggtccccagggtctgggtgggtcacgtggtattgttggtctg cctgggcagcgtggagagaggggcttccctggccttcctggtccttctggagagcccggt aagcagggagctcctggtgctggtggtgaccgtggacctcctgggcctgtggggcctcct ggactgtctggacctgctggtgagcccggaagagagggcaatgctggatctgatgggccc cctggtagagatggatccaccggagtcaagggtgagcgtggtaacactggtcctgcaggt gcacctggtgcccctggcgctcccggtgcccccggccctgttggcccccttggcaagcag ggagacagaggagagggaggtgcccaaggacctgccggacctgctggaccagctggtgct agaggaatggctggaccccaaggaccacgtggagacaagggagaggctggcgagacagga gagaggggacagaagggacaccgtggcttcaccggtctgcagggtcttcccggacctcca ggctccgctggagaccagggagctgctggacctgccggacctagtggcgctaagggaccc cctggcccagttggtcccgctggtaaggatggatctaacggtcagcctggacccctcgga ccccctggacctcgtggtcgttctggagaaactggccctgctggtccacctggtaacccc ggaccacctggtcctcctggtcctcccggccctggcatcgacatgtctgcctttgctggc ctgtctcagcctgagaagtctccggatcccctgaggtacatgagggctgatgaggcgtcc agctccctgaggcagcacgacgtggaggtggactccacactcaagtccctcaacaaccag atcgagaacctgcgcagccccgatggtagccagaagaaccctgcccgcacctgcagagac ctcaaactgtgccaccccgagtggaagagcggcgactactgggtggatcctaacattggc agcacagctgacgccatcaaggtcttctgcaacatggagactggcgagacctgtgtgtac cccagcatagccaacgtgccacaaaagaactggtggacaagcaagagcaaggaccgcaaa cacgtctggttcggagagaccatgaatggaggattccacttcagctacgctgaggacagt accaatgctgccagtatccagctgacattcctgaggctgctgtccacggaagcgtctcag aatctcacctaccactgcaagaacagcgtggcctacatggatgcatccaccggcaacctg aagaagggtctgctgctccagggctccaacgaagttgagatcagagccgagggcaacagt cgcttcacctacagcgttgtggaggatggctgcaagaaacacacaggccagtggggcaag actgtcttcgagtacaaaacacagaagacctcccgtctgcccatcgtggacattgctccc atggacattggaggtgcggaccaggagttcggtgtggacgtgggtgcagtctgcttcttg taa

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