Coregonus clupeaformis (lake whitefish): 121545471
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Entry
121545471 CDS
T08357
Name
(RefSeq) mRNA export factor-like isoform X1
KO
K14298
mRNA export factor
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121545471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121545471
03036 Chromosome and associated proteins [BR:
cclu03036
]
121545471
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121545471
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121545471
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_EML_2
WDR55
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_EIPR1
eIF2A
WD40_MABP1-WDR62_1st
Beta-prop_Nup120_160
NBCH_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
Exonuc_X-T_C
Motif
Other DBs
NCBI-GeneID:
121545471
NCBI-ProteinID:
XP_041711946
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Position
30:1816056..1821167
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AA seq
372 aa
AA seq
DB search
MSLFGASTGFGAGGFGAATTDTHNPMKDVEVTSPPDDSISCLAFSPPAMPGNFLIGGSWA
NDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSEDGSKVFTASCDKTAKMWDLNSNQAIQI
AQHDAPIRTVHWIKAPNYNCIMTGSWDKTLKFWDTRSPNPILSLQLPERCYCADVVYPMA
VVASADRGLIVYQLENQPSEFRRIDSPLKHQVTGLTYQHRCIAIFKDKQNKPAGFALGSI
EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVGSDGR
FSFWDKDARTKLKTSEQLDQPITACSFNNNGNIFAYASSYDWSKGHEYYNPQKKNYIFLR
NATEELKPRNKK
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgttcggggccagcactggctttggcgcggggggattcggagcggcaactacg
gacacccacaacccaatgaaggatgtggaagtaacctcacccccagatgacagcatcagt
tgcttggcgttcagtccccctgccatgccagggaacttcttgataggggggtcctgggcc
aatgatgtgaggtgttgggaggtacaggacaacgggcagacagtccccaaagcccagcag
atgcacacgggtccagtccttgatgtctgctggagcgaagacggtagcaaggttttcact
gcgtcttgtgacaagactgccaaaatgtgggacctcaacagcaaccaggcaatacagatc
gcacagcatgatgctcctattagaacagtccactggatcaaagcccccaactacaactgc
atcatgacaggtagctgggacaaaactctgaagttctgggacacccgctcgcccaaccca
atcttgtctctgcagttgccggagaggtgctactgtgcagacgtggtgtaccccatggca
gtggtagcttctgcagaccgaggtttgattgtatatcagcttgaaaaccagccgtctgag
ttcaggaggatagactcaccactcaaacaccaggtgactggtctcacataccagcaccgc
tgcatagccatttttaaggacaaacagaacaagcctgctggatttgctctcgggagcatt
gaagggcgggtcgccattcactacatcaacccccctaacccagccaaggataacttcacc
tttaagtgccacaggtcgaatggaaccaacacagccacaccacaagatatctatgctgta
aatgccatctccttccaccctgtccacgggacactggcgactgttgggtcggacggtcgc
tttagcttctgggataaagatgcccgcaccaagctgaagacctcggagcagctggaccag
ccaatcacagcatgctcgttcaacaacaacggcaacatctttgcctacgcctccagctat
gattggtcaaagggacatgagtactacaaccctcagaaaaagaactacatcttcctgcgt
aatgctactgaggagctgaaaccacggaacaagaaatga
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